Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2440 84.2 2e-11 seq179 84.2 2e-11 seq2185 82.4 6e-11 >seq2440 Length=28713372 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/89 (83%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAG 115583 || |||||||| |||||||||||||||| |||||||||||||| | || | | ||| Sbjct 8420453 TGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCAACCAAAG 8420394 Query 115584 GAACCAAAACTGATATATTGAGCCATTCG 115612 |||||| ||||||| || ||||||||||| Sbjct 8420393 GAACCATAACTGATTTAATGAGCCATTCG 8420365 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/89 (83%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAG 114386 || |||||||| |||||||||||||||| |||||||||||||| | || | | ||| Sbjct 8420453 TGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCAACCAAAG 8420394 Query 114387 GAACCAAAACTGATATATTGAGCCATTCG 114415 |||||| ||||||| || ||||||||||| Sbjct 8420393 GAACCATAACTGATTTAATGAGCCATTCG 8420365 >seq179 Length=33312291 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/92 (83%), Gaps = 4/92 (4%) Strand=Plus/Plus Query 114328 CAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCT 114383 || || |||||||| |||||||||||||||| |||||||||||||| | || | | Sbjct 12094935 CATTGGCATGTATTAGCTCTAGAATTACCACTGTTATCCAAGTAACGGTTGGAGCGACCA 12094994 Query 114384 AAGGAACCAAAACTGATATATTGAGCCATTCG 114415 ||||||||| ||||||| || ||||||||||| Sbjct 12094995 AAGGAACCATAACTGATTTAATGAGCCATTCG 12095026 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/92 (83%), Gaps = 4/92 (4%) Strand=Plus/Plus Query 115525 CAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCT 115580 || || |||||||| |||||||||||||||| |||||||||||||| | || | | Sbjct 12094935 CATTGGCATGTATTAGCTCTAGAATTACCACTGTTATCCAAGTAACGGTTGGAGCGACCA 12094994 Query 115581 AAGGAACCAAAACTGATATATTGAGCCATTCG 115612 ||||||||| ||||||| || ||||||||||| Sbjct 12094995 AAGGAACCATAACTGATTTAATGAGCCATTCG 12095026 >seq2185 Length=13751209 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| ||||||||||| || || ||| |||||||||||| |||||||| | | Sbjct 8329432 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAATCAGAC 8329373 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||| ||||| || || | |||||| || || Sbjct 8329372 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 8329313 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 8329312 ATGCCCTCCTTGTCC 8329298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397028070729388