Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2185 120 7e-22 >seq2185 Length=13751209 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||| ||||||| || ||||| || ||||| | ||||| || || ||| Sbjct 8329624 TCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTCCCAGCAAAG 8329565 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || |||||||| |||||||| || || ||||||||| Sbjct 8329564 ATGAGCCTCTGCTGGTCAGGGGGAATACCTTCTTTGTCCTGGATCTTGGCCTTCACGTTT 8329505 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || | ||||| ||||| || ||||| ||||| ||| Sbjct 8329504 TCGATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 8329445 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 8329444 AAAATCTGCAT 8329434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179547178999732