Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2185 107 2e-18 >seq2185 Length=13751209 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| ||| |||| || | || | | | |||||||| ||||| ||||||||| Sbjct 8329661 GCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCGGA 8329602 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || || ||||| || | | |||| || | ||| ||||| || || Sbjct 8329601 CAGGGTGCGGCCATCTTCCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGG 8329542 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| || || | | ||| | |||||| | | ||| || Sbjct 8329541 AATACCTTCTTTGTCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCAAC 8329482 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || |||||||| || || || |||||||||||| Sbjct 8329481 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCATG 8329433 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || || || || ||||| || | | Sbjct 8330083 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCTTCTAGCTGTTTCCCAGCA 8330024 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||||||||| ||| || || | Sbjct 8330023 AAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACG 8329964 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | | ||||||||||| || | || || |||||||| || || Sbjct 8329963 TTCTCGATAGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTC 8329904 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 8329903 ACAAAGATCTGCATG 8329889 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || || || || || ||||| | | Sbjct 8329171 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCA 8329112 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||||||||| ||| || || | Sbjct 8329111 AAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACA 8329052 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||||| || | || || || ||||| || || Sbjct 8329051 TTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTC 8328992 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 8328991 ACGAAGATCTGCATG 8328977 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || || || || || | | Sbjct 8329855 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCA 8329796 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||||||||| ||| || || | Sbjct 8329795 AAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACG 8329736 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||||| || | || || || ||||| || || Sbjct 8329735 TTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTC 8329676 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 8329675 ACGAAGATCTGCATG 8329661 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || || || || || | | Sbjct 8330311 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCA 8330252 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||||||||| ||| || || | Sbjct 8330251 AAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACG 8330192 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||| | || | || || || ||||| || || Sbjct 8330191 TTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTGCCGGTCAGGGTCTTC 8330132 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 8330131 ACGAAGATCTGCATG 8330117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496218393931680