Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq6099 125 1e-23 seq6215 114 2e-20 >seq6099 Length=15850405 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||| || ||| | || ||| ||||||| || ||||| || || || | || ||| Sbjct 5119718 GTAGTTTGGAATAACCGTTCATCATCCCATTCTGGATGTTCCTGCTTAAGGATGTCACAG 5119659 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 |||| |||||| || || ||||||||||| || |||||||||||||| || || | |||| Sbjct 5119658 ACCCGGTTGTGCTCCCTGAGCCATATGGTAGCATACATCATTAAACCTGGGACCAGACCA 5119599 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | || || | || | |||| || || || | || | ||||| ||| Sbjct 5119598 AACACCTCCTGTCCTACAGAGAATTGTAGATGCTCAGGAACATGAGGAGGATACATCATT 5119539 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 | | || || || || || || || || |||||||| || |||| Sbjct 5119538 TCTGCTTGAGTATCCTTCACTGTTGGAGGGTACATTTCTCCACCAAT 5119492 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || || |||||||| || | || || || || | ||| ||||| Sbjct 5118061 ACCTTTAACACCCATGGGTGTTGGGCAGTCTCGTGCTACTGGCGGAAGGGCTCTTGTATA 5118002 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 ||||| || || ||||| ||||||||||| ||||| || || || ||||| || Sbjct 5118001 GTAGGAAAGGTTGGAAAAGGCTTCCCAGCTTTTGTAACCGTATTCACTATTGTATGTTGG 5117942 Query 10509 GGGACTGTCAATCATCTCGGACCTGGCTA 10537 |||||||||||||| | ||||| |||| Sbjct 5117941 GGGACTGTCAATCAAATGTGACCTTGCTA 5117913 Score = 87.8 bits (96), Expect = 3e-12 Identities = 125/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||| | |||| |||||| |||| || || ||||| || || || |||| ||||||| Sbjct 5120849 TCAGGTAGAAGAGGGTGCCAGTGGTACAGAGTGTTGAATTCAGCTGCAATTCTGTTCTGG 5120790 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 |||||||| ||| ||||| | ||| || ||||| | |||| ||| ||||| | Sbjct 5120789 TACTGAAACTTTTGGT--TAAACAGAAGCTCAGGATCAAACTTCAGCTTGAAATGGTAGC 5120732 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGTAA 9724 |||| | || || ||||| | | || | ||| || ||||| ||||| |||| Sbjct 5120731 CGCTCAAGTGTTGCACATAGTCTTCAATGACAATCTTGATGGTCTCCCCTGTAA 5120678 >seq6215 Length=22149898 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||||||||||||||| ||||||||| | |||||||||||| |||| ||| ||||| Sbjct 21085328 CCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATGGGGTTCCCCAGCAGCCCC 21085269 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 || | ||| || || ||||| | ||| | |||||||| || |||||||| || || Sbjct 21085268 TTGAGGGAGAAGGGGGCCCCGATCTCCACCATGCTCTCCCCAAAGATGGCGTTGGCTTGC 21085209 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 || || || | | | || | ||||| || | || |||| |||||| || || | Sbjct 21085208 GGCTTCTCCAGCAGCAGCCCCGGGTAGAACTCCAGGGCGTCGATGTCGCCGTACAGCTCC 21085149 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 ||| || || || |||||| ||| ||| || Sbjct 21085148 GCCAGCTGCGCCGCCTTCTCCTCCTCTCCTGCA 21085116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723663823419600