Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6834 87.8 3e-12 >seq6834 Length=1011959 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || || | ||||||| | || |||| |||||| || || |||| Sbjct 392707 CCTGCTTCCAGCCATAAAAGTGCATGCTGGTGAGCTTGCCGTAGTTGGGCTCCGCAATGT 392648 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | ||||| || |||||||| ||||||||||| | | || || || ||||| || | | Sbjct 392647 GGATGTTGAGGGACTGGCTCTGGTCGATGAACGCTCCACGGTCGGCTGCCATCTTAAGGA 392588 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 |||| ||||| || || |||||||| || || Sbjct 392587 TGGTTTTCTGGGAGATTTCCCACACAGTTTT 392557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795084689612640