Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2185 140 8e-28 seq6178 84.2 5e-11 >seq2185 Length=13751209 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || |||||||| |||| ||||||||||| || || | |||||| Sbjct 8329190 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATC 8329131 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || |||||||| | ||||||||| || ||| |||||| || Sbjct 8329130 TTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTC 8329071 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | | || || || | ||||| || Sbjct 8329070 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGT 8329011 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || ||||| || || || Sbjct 8329010 CTTGCCCGTCAGGGTCTTCACGAAGATCTG 8328981 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || |||||||| || | |||||||| | || || | ||||| Sbjct 8329646 CAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATC 8329587 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || || || |||||||| | ||||||||| || ||| |||||| || Sbjct 8329586 TTCCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATACCTTCTTTGTC 8329527 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| ||||| |||||| | | || || ||||| ||||| || Sbjct 8329526 CTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGT 8329467 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| ||||| || Sbjct 8329466 CTTGCCAGTCAGGGTCTTCACGAAAATCTG 8329437 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || |||||||| |||| ||||||||| | || || | |||||| Sbjct 8329874 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATC 8329815 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || |||||||| | ||||||||| || ||| |||||| || Sbjct 8329814 TTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTC 8329755 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| || | |||||| | | || || || | ||||| || Sbjct 8329754 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGT 8329695 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || ||||| || || || Sbjct 8329694 CTTGCCCGTCAGGGTCTTCACGAAGATCTG 8329665 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || |||||||| |||| ||||||||| | || || | ||||| Sbjct 8330330 CAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 8330271 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || |||||||| | ||||||||| || ||| |||||| || Sbjct 8330270 TTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTC 8330211 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| || | |||||| | | || || |||| || || || Sbjct 8330210 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGT 8330151 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| || || || Sbjct 8330150 CTTGCCGGTCAGGGTCTTCACGAAGATCTG 8330121 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || |||||||| || | ||||| |||| || || | ||||| Sbjct 8329418 CAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAATCAGACAGGGTGCGGCCATC 8329359 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || |||||||| | ||||||||| || ||| || || || Sbjct 8329358 TTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTC 8329299 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| ||||| | | || || || | ||||| || Sbjct 8329298 CTGGATCTTGGCCTTCACGTTCTCGATAGTGTCACTGGGCTCAACCTCGAGAGTGATGGT 8329239 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || ||||| || || || Sbjct 8329238 CTTGCCCGTCAGGGTCTTCACGAAGATCTG 8329209 >seq6178 Length=21545174 Score = 84.2 bits (92), Expect = 5e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | || ||| | ||||||||||||||||| || || |||| Sbjct 2683861 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGA 2683802 Query 199500 TGAGACGCTGCTGGTCCGG 199518 |||| ||||||||||| || Sbjct 2683801 TGAGTCGCTGCTGGTCAGG 2683783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178814445605298