Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2185 134 2e-26 seq1956 86.0 7e-12 >seq2185 Length=13751209 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | |||| |||||| |||| || |||||| ||||| |||||||||| Sbjct 8329890 TGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 8329831 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || || | | ||||||||||| | Sbjct 8329830 ACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGG 8329771 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || |||||| |||||| ||| | || | | ||||| || | |||| Sbjct 8329770 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCA 8329711 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||||||||| || || || ||||| ||||| Sbjct 8329710 CCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 8329662 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| ||| |||||| ||||| ||||||||||| || ||||| | Sbjct 8330332 CGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 8330273 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || || | | ||||||||||| || | || || ||| Sbjct 8330272 TCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTG 8330213 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||| || | ||||| |||| || ||| Sbjct 8330212 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATG 8330153 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || || ||||| ||||| Sbjct 8330152 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8330118 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | |||| |||||| |||| || |||||| ||||| |||||||||| Sbjct 8330118 TGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 8330059 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||| || || || || || | | ||||||||||| | Sbjct 8330058 ACAGAGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGG 8329999 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || |||||| |||||| ||| | || | | ||||| || | |||| Sbjct 8329998 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATAGTGTCACTGGGCTCCA 8329939 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 8329938 CCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 8329890 Score = 125 bits (138), Expect = 8e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | |||| |||||| |||| || |||||| ||||| |||||||| | Sbjct 8329206 TGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 8329147 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || |||||||| || || || || | | ||||||||||| | Sbjct 8329146 ACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCGGGGG 8329087 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || |||||| |||||| ||| | || | | ||||| || | |||| Sbjct 8329086 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCA 8329027 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | || | |||||||| ||||||||||| || || || ||||| ||||| || Sbjct 8329026 CCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 8328975 Score = 125 bits (138), Expect = 8e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | |||| |||||| |||| || |||||| || |||||||| || | Sbjct 8329434 TGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAATCAG 8329375 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 8329374 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGG 8329315 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| ||| | || | | ||||| || | || | Sbjct 8329314 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATAGTGTCACTGGGCTCAA 8329255 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||||||||| || || || ||||| ||||| Sbjct 8329254 CCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 8329206 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| || |||| |||||| |||| || |||||| || ||||||||||||| Sbjct 8329662 TGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCGG 8329603 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||| || || || || || | | ||||||||| | | Sbjct 8329602 ACAGGGTGCGGCCATCTTCCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGGG 8329543 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || |||||| |||||| ||| | | | | ||||| || | || | Sbjct 8329542 GAATACCTTCTTTGTCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCAA 8329483 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || || || || ||||| Sbjct 8329482 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 8329434 >seq1956 Length=91387 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 46492 CTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCAC 46551 |||||||||| |||||| ||||| || | | |||||||| | ||||| |||| Sbjct 2359 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAG 2418 Query 46552 CGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||| |||||||||||||| || || ||||| ||||| Sbjct 2419 CGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 2460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565188277484880