Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4011 95.1 9e-14 seq2395 95.1 9e-14 seq2337 89.7 4e-12 >seq4011 Length=4690409 Score = 95.1 bits (104), Expect = 9e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || || | || ||||| |||||||| |||||| | ||| | | ||||| Sbjct 151042 TGTTGTTGCTACTGTGGCTTTTGGAATGGGTATCAATAAAGCAGATATCCGGAGAGTTAT 150983 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||||||||| || ||| | || ||| || |||||||||||||| ||||| || || Sbjct 150982 TCATTATGGAGCCCCTAAGGAAATGGAATCATACTATCAAGAAATTGGAAGAGCTGGCCG 150923 Query 367113 TGATGGA 367119 ||||||| Sbjct 150922 TGATGGA 150916 >seq2395 Length=5449122 Score = 95.1 bits (104), Expect = 9e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | |||||| |||| ||||||||| ||||||||||| || |||| | || Sbjct 3519276 TTTTTGTCTAAACCATAAGCAATAGCAGCAGCTGTTGGTTCATTGATGATTCGGAGTACG 3519217 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||| ||||| | || |||||||| ||||| || | || || || || || || Sbjct 3519216 TTGAGACCTGCAATAGTACCAGCATCTTTTGTGGCCTGGCGCTGGGAGTCATTGAAGTAG 3519157 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || ||||| | || |||| Sbjct 3519156 GCTGGTACAGTGACCACAGCAT 3519135 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||||||||| || ||||||||||| | |||||| ||||||||||| ||||| || Sbjct 3521114 GCAGACACATTAAGGATGCCATTGGCATCAATATCAAAAGTGACTTCAATCTGAGGTACG 3521055 Query 517319 CCTCTCTGAGCAGGTGGGATCCC 517341 ||||| |||| || ||||| || Sbjct 3521054 CCTCTAGGAGCTGGGGGGATGCC 3521032 >seq2337 Length=11324096 Score = 89.7 bits (98), Expect = 4e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 ||||||||| ||||| | |||||| || || |||||||||||||| |||||||| | Sbjct 4602114 CTTTGTCTTCAGACTTATCTAAACCATAAGCCAAGGCAGCAGCAGTTGGCTCATTAATCA 4602055 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 ||||| |||||| | ||||||||| ||| ||||| || || || || Sbjct 4602054 CTCTCAGAACATTCAATCCAGCAATTTGTCCGGCATCCTTGGTAGCCTG 4602006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780470372352364