Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq6807 316 3e-81 seq2395 187 3e-42 seq2142 89.7 7e-13 >seq6807 Length=9299346 Score = 316 bits (350), Expect = 3e-81 Identities = 821/1238 (66%), Gaps = 30/1238 (2%) Strand=Plus/Minus Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | || ||| || |||| || || ||||| || |||||||||| || | | Sbjct 5386357 GTCATGACGCCGCCCGCCGTCTCGATGCCGAGCGACAGCGGCGTCACGTCCAGCAGCAGC 5386298 Query 6986 AGGTCTTGAACAGATTCGTTCC--CTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 ||||| || || ||| ||| ||| | ||| | | ||||||||| || |||| ||| Sbjct 5386297 AGGTCCTGCACG--TTC--TCCGACTTGTCGCCCATGAGGATGGCGGCCTGCACCGCCGC 5386242 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 ||||| || |||||||| |||||||| || | || ||||| || || || || || | Sbjct 5386241 GCCGTACGCCACCGCCTCGTCGGGGTTGATGCTCTTGTTCAGCTCCTTGCCATTGAAGAA 5386182 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||| | || | || || || ||||| || ||||| || || |||| ||||| || Sbjct 5386181 GTCCTGCAGCAGCTTCTGGATCTTGGGGATGCGCGTCGAGCCGCCCACCAGCACGATCTC 5386122 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACA 7221 | ||| | | || || | ||| | ||| || || | || || || || |||| Sbjct 5386121 CTGCACCTGCCCCTTGTCCAGCTTGGCGTCGCGCAGCGCCTTCTCCACGGGCTCCAGCGT 5386062 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 ||||||| ||| ||| ||||| || || || || || ||||| || ||||| Sbjct 5386061 GCCGCGGAACAGGTCGGCGTTCAGCTCCTCGAAGCGCGCCCGCGTGATGGACGTGTAGAA 5386002 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AA 7338 || | ||| ||| | | ||| || || || ||| | | || ||| || || | Sbjct 5386001 GTCGATGCCCTCGAACAGCGAGTCGATCTCGATGCTGGCCTG---CGTGGAGGAGCTCAG 5385945 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 ||| ||||| || ||||| |||||||| || | || || | || ||| ||| ||| Sbjct 5385944 CGTGCGCTTGGCCCGCTCGCACGCCGTGCGCAGCCGCCGCACCGCCCGCTTGTTGCCGCC 5385885 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 || || ||| || || || || ||||| || |||||| | | | || Sbjct 5385884 GATGTCGCGCTTGTGCTTGCGCTTGAACTCCTCCACGAAGTGCGTCACCATGCGGTTGTC 5385825 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 ||| || || || |||| ||| || || ||||| |||| || || || ||||| || | Sbjct 5385824 GAAGTCCTCGCCGCCCAGGTGCGTGTCGCCCGCCGTCGACTTCACCTCGAAGATGCCGTC 5385765 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 || ||| | | | || || || || || || || |||||||| || || || ||||| Sbjct 5385764 CTCGATGGTGAGGATGGACACGTCGAAGGTGCCGCCGCCCAGGTCGAAGATCAGCACGTT 5385705 Query 7579 CGTATCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 | | ||| || | ||||| || || ||||| ||||| || |||||||| || Sbjct 5385704 CTTCTCGCCGGCGCGCGCGCCCTTCTTGTCCAGCCCGTAGGCGATGGCGGCCGCCGTGGG 5385645 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || || || || | ||| ||||| | || || |||| || || || || || Sbjct 5385644 CTCGTTGATGATGCGCATCACGTTGAGGCCCGTGATGGTGCCCGCGTCCTTGGTGGCCTG 5385585 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || ||||| ||||| |||||||| || ||||| | ||| |||| | || || || Sbjct 5385584 GCGCTGCGAGTCGTTGAAGTAGGCGGGCACCGTGATGACGGCGTTCTGCACCTTGCGGCC 5385525 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 || || | ||| ||||| || ||||| || || || ||||| || |||||||| | Sbjct 5385524 CAGGTAGGCTTCGGCGATCTCCTTCATCTTAGTCAGCACCATGGAGCTGATCTCTTCGGG 5385465 Query 7813 CGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC 7871 | | | || || | || || ||| | || || | | | |||| || |||| | Sbjct 5385464 -GAAGAAGGTCTTGGCCTCGCCCTTATACTCCACCTGCACCTTGGGCTTG-CCGC--CCT 5385409 Query 7872 CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACT 7931 ||| | || | | | ||| | ||||| || | || ||| |||| ||| Sbjct 5385408 CGGACACTACGTGGAAGGGCCAGTGCTTCATGTCCGCCTGCACCGTGGGGTCGTCGTACT 5385349 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 | | ||||| || ||||| || || || | ||||| ||||||||||||| |||| Sbjct 5385348 TGCGGCCGATGAGGCGCTTGGCGTCGAAGATGGTGTTGGTGGGGTTCATGGCCACCTGGT 5385289 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG- 8050 |||| |||||||| ||||| || || || | ||||| || || ||||| | |||| Sbjct 5385288 TCTTGGCCGCGTCGCCGATGAGGCGCTC---CGTGTCCGTGAAGGCCACGTA-GCTGGGC 5385233 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCG 8110 || || || || || |||||||| ||||| || || || | | | || ||||||| Sbjct 5385232 GTGGTGCGGTTGCCCTGGTCGTTGGCAATGATCTCCACCTTGCCATGCTGGAAGACGCCC 5385173 Query 8111 ACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||| || ||||| || || || || || ||||| || Sbjct 5385172 ACGCAGGAGTACGTGGTGCCCAAGTCGATGCCGATCGC 5385135 >seq2395 Length=5449122 Score = 187 bits (206), Expect = 3e-42 Identities = 362/533 (68%), Gaps = 6/533 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||| || || || | || ||||||||||| || || || Sbjct 3519954 GCACCGTAAGCTACAGCTTCATCAGGATTGATGCTCTTGTTCAGTTCTTTGCCATTGAAG 3519895 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | || || | || ||||| || ||||| || || |||||||| ||||| || || Sbjct 3519894 AAGTCTTGTAGGAGTTTCTGAATCTTTGGGATGCGAGTGGATCCACCAACCAATACTATG 3519835 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA-- 7217 || | | | ||||| |||| ||| | || || | | || || ||||| |||| Sbjct 3519834 TCGTGGATCTGGGATTTGTCGAGCTTGGCATCCCGCAAGGCCTTCTCCACAGGGTCCAGC 3519775 Query 7218 -TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 ||| |||||||| || || || ||||| || || || || || || || Sbjct 3519774 GTACC---ACGGAACAGATCAGCGTTCAACTCTTCAAAGCGAGCTCGTGTGATTGAGGTG 3519718 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT 7336 ||||| |||| ||| || || | |||||||| ||||| | | || | | || || Sbjct 3519717 TAGAAGTCAATGCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGCGTGCTGGAGGAG 3519658 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 | || |||||||| || ||||| || || || | ||| |||| || | | ||| | Sbjct 3519657 AGGGTACGCTTTGCACGTTCACATGCTGTGCGGAGACGGCGAACTGCTCTCTTGTTTTCA 3519598 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456 || |||||||| || || ||||| || || || |||||| | | ||| | Sbjct 3519597 CTGATGTCTTTCTTGTGCTTGCGTTTGAATTCAGCAATGAAGTGGTTGACCATTCTGTTA 3519538 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||| ||| ||||| || || || | || |||||||||||||| Sbjct 3519537 TCAAAGTCTTCTCCACCCAGGTGGGTATCACCTGCAGTAGACTTCACTTCAAAGATACCG 3519478 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAAT 7569 ||||||| | | | || ||||| || || ||||||||||||||||| || Sbjct 3519477 TCTTCAATTGTGAGAATAGACACATCGAAAGTGCCACCACCCAGGTCAAAGAT 3519425 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || || || | ||| || || ||||| || || ||||||||||| || || || || | Sbjct 3519276 TTTTTGTCTAAACCATAAGCAATAGCAGCAGCTGTTGGTTCATTGATGATTCGGAGTACG 3519217 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || |||||||| | |||||||| || || || || || || || || |||||| Sbjct 3519216 TTGAGACCTGCAATAGTACCAGCATCTTTTGTGGCCTGGCGCTGGGAGTCATTGAAGTAG 3519157 Query 7715 GCCGGGACCGTTACGACCGC 7734 || || || || || || || Sbjct 3519156 GCTGGTACAGTGACCACAGC 3519137 >seq2142 Length=776452 Score = 89.7 bits (98), Expect = 7e-13 Identities = 238/360 (66%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || || |||| ||| |||||||| || || || || || || ||||| || Sbjct 529459 TCAAAGTCCTCCCCGCCCAGGTGGGTATCCCCAGCCGTGGCCTTCACCTCGAAGATGCCG 529518 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||| | | | || ||||| || || ||||| |||||||| || | ||| | | Sbjct 529519 TCTTCCACTCGCAGGACAGACACATCGAAGGTGCCACCCCCCAGGTCGAAGACGAGCATG 529578 Query 7577 TT---CGTATCGTCGTCTTTGTTCT---TATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 | || || | || | ||| | || || || || || || || |||||||| Sbjct 529579 TGGTGCGCCTCACCCCCTGGGCTCTCGGTCTCCAGCCCATAGGCAATGGCAGCCGCCGTA 529638 Query 7631 GGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 ||||| || | || || ||| || |||||||| || || |||| || | || || Sbjct 529639 GGTTCGTTGAGGATCTTGAGGAC-GTGGAGGCCAGCGATGGTGCCCGCGTCAATGGTGGC 529697 Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749 | || || | |||||| ||||||||||| || || | ||| || | ||||| Sbjct 529698 GCGGCGCTGGGCATCGTTGAAGTAGGCCGGCACGGTGATGACGGCTTGGGTGACCGGGCG 529757 Query 7750 ACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||| || | ||| || | | ||||| |||| || ||||| | || ||||| || Sbjct 529758 GCCGAGGTAGGCTTCGGCCGTCTGCTTCATCTTGGCCAGCACCATGGCAGAGATCTCCTC 529817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635076479598960