Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3826 129 7e-25 >seq3826 Length=16266510 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | ||||||||||| || | |||||||| | ||||||||| | Sbjct 9775673 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9775614 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||| || || || ||||| || ||||||||||| || ||||| ||||||||||||| Sbjct 9775613 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 9775554 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 9775553 CTACTACACGTTCTCC 9775538 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19251 ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310 ||||||||||||||||||||| ||||| || || ||||| || || |||||||| | || Sbjct 9772520 ACTGTACATTTCTGAATGAATGTTTTCCATGGCAATCTGGAAGCCATAAAAACAGCGAGC 9772461 Query 19311 TTCTGTTATCTGTACTTC 19328 |||||| ||||| ||||| Sbjct 9772460 TTCTGTGATCTGCACTTC 9772443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562058955002160