Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2395 107 2e-17 seq4379 91.5 1e-12 >seq2395 Length=5449122 Score = 107 bits (118), Expect = 2e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | ||||||||||| || || |||||||| || || || || || Sbjct 3519128 GTTACAAATGCTGTGGTCACTGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACA 3519187 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||||||||| |||||| || || || || || || || ||||||||||| || ||| Sbjct 3519188 AAAGATGCTGGTACTATTGCAGGTCTCAACGTACTCCGAATCATCAATGAACCAACAGCT 3519247 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 3519248 GCTGCTATTGCTTATGG 3519264 >seq4379 Length=1760551 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 552445 TTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAG 552504 |||||| ||| ||| | ||||||| ||||| ||| || || |||||| | || Sbjct 336109 TTTTTGCAGGTGAACGTCCTCTCACTAAGGATAACCATCTCCTGGGCACTTTTGACTTGA 336050 Query 552505 AAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATG 552564 || ||||||||||| |||||||| || ||||| ||||||||||| || || || |||| Sbjct 336049 CTGGAATTCCTCCTGCCCCTCGTGGTGTCCCGCAGATTGAAGTTACCTTTGAGATAGATG 335990 Query 552565 CCAATGGAAT 552574 |||||||| Sbjct 335989 TGAATGGAAT 335980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028920837286060