Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3826 134 2e-26 seq4704 98.7 1e-15 >seq3826 Length=16266510 Score = 134 bits (148), Expect = 2e-26 Identities = 107/129 (83%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| || | ||||||||||| || | ||| |||||||| |||||||| || Sbjct 9775671 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 9775612 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | |||||| || | ||||||||| ||||||||||| || ||||| ||||||||||| ||| Sbjct 9775611 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 9775552 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 9775551 ACTACACGT 9775543 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | ||||||||||| |||| |||| || || |||||||| ||||| Sbjct 9777040 CATGACTCCCATCCTCTGATATTCTCCTACTCTCTTTTCAAAGAAGTTTGTCTTGCCTTC 9776981 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||||| || || |||||||| ||||||||||| Sbjct 9776980 AAGTGAAATGTTCTCCATAAAGTCAAATGGATT 9776948 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| |||| ||||| || || || | ||| |||||||| || ||||| ||||| || || Sbjct 9772547 ATCTTTTATGTAAGTGTCGATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 9772488 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||| || ||||||||||| | |||||| Sbjct 9772487 AATCTGGAAGCCATAAAAACAGCGAGCTTC 9772458 >seq4704 Length=24298902 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | ||||| || || || | ||| ||||| || ||||| || || Sbjct 16882143 TCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAAGCCTCTCTTCTTC 16882084 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||||||||| || ||||||||||| || ||||| || ||||| ||||| ||||| || Sbjct 16882083 AGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGGCA 16882024 Query 37320 AC 37321 || Sbjct 16882023 AC 16882022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592264276307760