Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3201 89.7 4e-13 seq179 87.8 1e-12 >seq3201 Length=36968188 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 ||| || || || ||||| |||||||||||||| || || || ||||| ||||| || || Sbjct 931656 TAGGCCTGTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATGTTGAAAGG 931597 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987 || || || ||||| || || || ||||| || ||||| || || ||||| || | Sbjct 931596 CACTCCTAGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCACCATTTAC 931537 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 || || || || || | | ||||| || || | |||||| Sbjct 931536 AACATAGAATTGGCAGAGAGCATGGCAGGGGGGTAAAGCCAT 931495 >seq179 Length=33312291 Score = 87.8 bits (96), Expect = 1e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 112104 AAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGAT 112163 ||| || |||||||| |||| ||| || || ||| | | ||| | ||||||||| || || Sbjct 7261479 AAGTTCTCTGCTGAGCACTATGTTAATTCTATCTTTTAAAGGACGATTCTTTTCAGGAAT 7261538 Query 112164 GGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 |||||||| ||||| |||||||||||| ||| || || || ||| Sbjct 7261539 AGAGAACCAGGTCTTCTTACCCATTATCAACACATTTTGTTTACCT 7261584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408582271688462