Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2185 98.7 8e-16 >seq2185 Length=13751209 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || | | || | |||| |||| ||| Sbjct 8329180 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGC 8329121 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| || | | ||| || ||||| |||||||||||||| || || || || Sbjct 8329120 TTACCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTG 8329061 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||||| || ||||||| || ||||| || Sbjct 8329060 GCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTC 8329001 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTAC 101475 | || || || || ||||||||| |||| Sbjct 8329000 AGGGTCTTCACGAAGATCTGCATGTTTAC 8328972 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| |||| | ||| | | |||| || | || Sbjct 8330092 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCTTCTAGCTGT 8330033 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| || ||||| |||||||||||||| || || || || Sbjct 8330032 TTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTG 8329973 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||||| | ||||| || ||||||| || ||||| || Sbjct 8329972 GCCTTCACGTTCTCGATAGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTC 8329913 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || ||||| ||||||||| Sbjct 8329912 AGGGTCTTCACAAAGATCTGCATG 8329889 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || |||||||| || || || || ||||| |||| | || | | |||| |||| ||| Sbjct 8330320 TGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGC 8330261 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| || ||||| |||||||||||||| || || || || Sbjct 8330260 TTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTG 8330201 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| | ||||| || || || | || |||||||| Sbjct 8330200 GCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTGCCGGTC 8330141 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 8330140 AGGGTCTTCACGAAGATCTGCATG 8330117 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| |||| | || | |||| |||| ||| Sbjct 8329864 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGC 8329805 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| || ||||| |||||||||||||| || || || || Sbjct 8329804 TTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTG 8329745 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| | ||||| || ||||||| || ||||| || Sbjct 8329744 GCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTC 8329685 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 8329684 AGGGTCTTCACGAAGATCTGCATG 8329661 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || ||||||||||| | | || | | |||| |||| ||| Sbjct 8329408 TGCAGGGTGGACTCCTTCTGAATATTGTAATCAGACAGGGTGCGGCCATCTTCCAGCTGC 8329349 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| || || || |||||||| || || || || || || Sbjct 8329348 TTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTG 8329289 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||||| | || || || ||||||| || ||||| || Sbjct 8329288 GCCTTCACGTTCTCGATAGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTGCCCGTC 8329229 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 8329228 AGGGTCTTCACGAAGATCTGCATG 8329205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396244138512558