Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1482 196 9e-45 seq269 140 6e-28 seq3207 125 1e-23 seq6834 105 1e-17 >seq1482 Length=6206 Score = 196 bits (216), Expect = 9e-45 Identities = 171/213 (80%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| |||||||||||||| || || | | || || ||||||| Sbjct 5289 AGGACCTTCTGCTTGAGCTGGGCCACCTGGTCGCGGAGCAGGCCGGCCGTGCTGGACAGC 5348 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 || ||||| || | ||| || |||||| |||||||||||||| |||||||| ||||| Sbjct 5349 CCCGCGTTCTCCGCCTTCAGGCTCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGC 5408 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||| |||||||| |||| ||||||||| || | ||| || ||| ||||| Sbjct 5409 TTCCTCTTGCGGCACTTGGTGGCGGCCAGGCGGTTCCGCAGCCGCTTGCGCTCCACCTTG 5468 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| |||||||||||||||||||| || ||| Sbjct 5469 ATGCGCTCCTGGTCCTCCATGTCGATGGGCGAC 5501 >seq269 Length=11391 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| || |||||||| || ||||| | | ||||| || || Sbjct 10718 AGCACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGTTGGCGGTGGAGGCGAGC 10777 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| |||||||||||||||| |||||| ||||| Sbjct 10778 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGCCGCGAGATGCGCTCCAGC 10837 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||| |||| ||| || | ||||||||| || | ||| || ||||||||| Sbjct 10838 TTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTTCCGCAGCCGCTTGCGCTCCGCCTTG 10897 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||| ||||| ||||||||||| || || Sbjct 10898 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGA 10929 >seq3207 Length=25689087 Score = 125 bits (138), Expect = 1e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 241439 ACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACC 241498 |||||| | ||||| | | ||||| || ||| | ||||| | ||| ||| || Sbjct 8166993 ACCTGGGCGCGCAGGAGGCTGGCGGTGGCGGCCAGCTCCGCGTTCTGCCCCTTCAGCGCC 8166934 Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 ||||| ||||||||||||||||||||||| ||||| ||||| || ||||| |||| ||| Sbjct 8166933 TTCACCTTCTCCTCCAGCCGCGCGATGCGCTCCAGCTTGCGGCGCCGGCACTTGGAGGCC 8166874 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | ||||||||| || | ||| || |||||||| | || |||||| ||| ||| Sbjct 8166873 GCGATGCGGTTCCGCAGCCGCTTGCGCTCCGCCTTCAGCCGCTCCTGGCTCTCGGCGTCC 8166814 Query 241619 ATCGGAGAC 241627 | ||| ||| Sbjct 8166813 AGCGGCGAC 8166805 >seq6834 Length=1011959 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || ||||||||||||||||| ||||||||||||||| || ||| Sbjct 384686 GTGTACTCCACTATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTTTGCTGG 384627 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| ||| ||| ||||| || |||||||| |||| |||||||| |||| Sbjct 384626 TTGCTCTTCCGGTTACAAGAGTCCTTATACAGCATGTAAGGGGTACCGGTCTCAGTCTGG 384567 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | ||| || ||||||| Sbjct 384566 GACTCAATGATGGCGTACCAGAGCTGCTGGGCTTTCACCACCC 384524 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| || || || | ||| || || ||| |||||||| | | | ||| ||| Sbjct 383468 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGCTCCTCCTT 383409 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || | ||| || || ||| ||||| |||||||||||| |||||||||||||| ||| Sbjct 383408 CCCGGTGTTCTTCTTCAAATCGAGAAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGTA 383349 Query 213941 GATGGCAAAGGCGCCCGGCCTCT 213963 ||||||||||| ||||| |||| Sbjct 383348 AATGGCAAAGGCCCCCGGTCTCT 383326 Score = 86.0 bits (94), Expect = 1e-11 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 |||||||| ||||| | ||||| ||| | || || || ||||| ||||| ||||| Sbjct 387187 CCTTTGCTGACGGGACAGCCCTCGTACGTCTCATATGGCCCTTGCTCTTTGGCGAGCTCA 387128 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| || || ||||||| ||||| ||||| |||| | ||| || || | Sbjct 387127 CAGCTGGCCTCCAAAGCGCCGTAGTAAATGGTCTCAAAGATCTGCTGGTTCAGGAGCTGG 387068 Query 213261 GCCTCTGGGGACGTGAAGGGC-ATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGAC 213319 ||||| || | ||||| ||| |||| | ||| | || ||||| || || || Sbjct 387067 GCCTCAGGACTCTCAAAGGGGTATC-TCATCAGGATGAAGGCGTCTGCCAGGCCTTGCAC 387009 Query 213320 CCCGATGCCGATGGGTCTGTG 213340 |||||||||||||| | ||| Sbjct 387008 ACCGATGCCGATGGGGCGGTG 386988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931450196328960