Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6834 98.7 2e-15 seq4704 91.5 3e-13 >seq6834 Length=1011959 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 222031 GACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTG 222090 ||||| | ||||||||| || || ||||| || || ||||| || || | ||||| Sbjct 383477 GACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTG 383418 Query 222091 CTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGG 222150 ||||||| ||| |||| ||| ||| ||| | ||||||||| ||||| ||||||||| Sbjct 383417 CTCCTCCTTCCCGGTGTTCTTCTTCAAATCGAGAAACTCAAAGATGTCCAAGTGCCACGG 383358 Query 222151 CTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||||| || | ||| | || || |||| || Sbjct 383357 CTCCAGGTAAATGGCAAAGGCCCCCGGTCTCT 383326 >seq4704 Length=24298902 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| ||||| || ||||| ||| || || ||||| ||||| || | Sbjct 16882020 TGGTTGCCTTTGCTGCAGTGGAAGGAATCTTCTTCTCAGGATCTTTTGCTGCCATATTTT 16882079 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||| ||| ||| || ||||| || ||| ||||| ||||| |||||||| ||||| Sbjct 16882080 GGCTGAAGAAGAGAGGCTTGATGCCTGGACTG-ACTTTCTCCAATGAGCTCATTAGCAGA 16882138 Query 26002 GACGAGG 26008 || |||| Sbjct 16882139 GATGAGG 16882145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928762434687360