Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2395 98.7 6e-15 seq4011 89.7 3e-12 >seq2395 Length=5449122 Score = 98.7 bits (108), Expect = 6e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| ||||| || || ||||| || || || || || || ||||||| Sbjct 3519135 ATGCTGTGGTCACTGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACAAAAGATG 3519194 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||||||||||| || || | || || || |||||||||||||| || || Sbjct 3519195 CTGGTACTATTGCAGGTCTCAACGTACTCCGAATCATCAATGAACCAACAGCTGCTGCTA 3519254 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 ||||||||||| | || || || Sbjct 3519255 TTGCTTATGGTTTAGACAAAAA 3519276 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||| || ||| | || ||||| || ||| || || | ||| | || || Sbjct 3520974 TGAAGGGGAGAGAGCCATGACAAAAGACAACAACTTGCTGGGCAAGTTTGAACTGACTGG 3521033 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 || || || ||||| ||||| || ||||| |||||||| ||||||||||||||||| || Sbjct 3521034 CATCCCCCCAGCTCCTAGAGGCGTACCTCAGATTGAAGTCACTTTTGATATTGATGCCAA 3521093 Query 476152 TGGTATTCTTAATGTTACTGCT 476173 ||| || |||||||| ||||| Sbjct 3521094 TGGCATCCTTAATGTGTCTGCT 3521115 >seq4011 Length=4690409 Score = 89.7 bits (98), Expect = 3e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || ||||||||||| || ||| || | ||||| || ||| Sbjct 150917 CCATCACGGCCAGCTCTTCCAATTTCTTGATAGTATGATTCCATTTCCTTAGGGGCTCCA 150976 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || ||| | | ||||| |||||| |||||||||||||| || | || ||| Sbjct 150977 TAATGAATAACTCTCCGGATATCTGCTTTATTGATACCCATTCCAAAAGCCACAGTAGCA 151036 Query 627889 AC 627890 || Sbjct 151037 AC 151038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267874903919912