Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq6358 176 5e-39 seq6295 141 1e-28 >seq6358 Length=37317430 Score = 176 bits (194), Expect = 5e-39 Identities = 639/997 (64%), Gaps = 5/997 (1%) Strand=Plus/Plus Query 160037 CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTC 160096 ||| | | ||| || || || ||| || | ||| || | || || |||||| ||| Sbjct 23794630 CAGAGCTTTGTCTCTCAAATATTCTTCTAAACACTGAATTGCAAAAGGGTCAACATCTGT 23794689 Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| ||||| || || || | ||||| ||| | |||| || | ||||| Sbjct 23794690 GTCAAATTTGTTAGCAAAGAAGTGGTGT---TTCCACAACATCCCGTTTAAATCTCCCAC 23794746 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| ||||| || || ||||| | || | || | ||| || || || |||| || || Sbjct 23794747 CCCAAACACACACACAGAACGGACATGAATTCCATGGCATGGTGGATAGGGAGCACCGTT 23794806 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 || || |||||| ||||||||||||||||||| ||||||| || | |||||| || Sbjct 23794807 AAATACATCCCCTTCGAAGTACTGCCACTTCACAAATCTGGCTAGGGCATTCATGTCAGA 23794866 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 || || || | | | ||| ||||| ||||| | || || | || | || Sbjct 23794867 AACATCATACTTATTGCTGGAAGAAACTGCACCTGGAACTTCCGGGATTCTTTGAATAGT 23794926 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT 160396 ||||||| || ||| || ||||| || || || |||| |||||| || || | ||| Sbjct 23794927 AGCCCACAAGTATTCATCAGGGCTATATGTATCTTTAGCCCATTCAATAAATTTAAGGAT 23794986 Query 160397 TAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCC 160456 | |||| | || | | || | || | || ||||| || || ||||| Sbjct 23794987 TTTGCTGTTTTCTAACACATATGCTACAAATCTCCTACTAACAACAAAATAGGCACTGCC 23795046 Query 160457 GGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCAC 160516 || || || ||| | | ||| || | |||||| ||| |||| || | Sbjct 23795047 AGAAAAAATGGGTGTACTAAGAGGTGGTAGTTTTTTGTCTACACCCATGTTTTTCAGCTT 23795106 Query 160517 TCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTC 160576 ||| | || | | | | || ||||| | || |||| || ||||| || Sbjct 23795107 TCCGTCAACAATTTCATAATGGTTTTTCCATCGTACTTCTTTGTTTGGAGGCATTTTCTC 23795166 Query 160577 CGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGT 160636 || |||| |||||| |||| | | | ||||| | || || || || || || Sbjct 23795167 AGTTTCTAAACTGTTTTCACCCTTTAAAGCTTTCAATTTCTCTACAATTTCCTCATTGGT 23795226 Query 160637 CTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTC 160696 || | |||||||| | || || | |||||||| || |||||||| | || Sbjct 23795227 TTTAATGGGAAAGTCCATGCCACAAAGGTTTATCAAATATTTCCATTTTGTATTCCTCCT 23795286 Query 160697 GTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTAC 160756 || ||||| ||||||| |||| ||||| || || | |||||| || || |||||||| Sbjct 23795287 GTAGAGGTCTTTCATGCAGTTAAGGTCTGCTTGTACCCTGCTCCATGATGCATACACTAC 23795346 Query 160757 GTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGC 160816 | || | || ||||| | |||||| ||||| ||||| || | |||||| ||| | Sbjct 23795347 ACTTTCCATTTGGCTGGCAATAAAGACATTATCAAAACATGATGCAATTCCCTTCACTG- 23795405 Query 160817 CAGAAAGAACATCTT-ATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCG 160875 ||| ||| | || | |||| |||||| || | ||| || |||||||| | Sbjct 23795406 CAGCCAGATAAGATTCGGGAGACTTTTTGTCCACATGAATGCAGTAGTAATTCTGAGGAG 23795465 Query 160876 CGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGT 160935 ||||| | ||| || | ||||| ||||| || || || |||| | ||| || || | Sbjct 23795466 TATAGATTGACCTTAGAAGTCTCTCAAACATATCAATTTTGTGATAAACCACTATTGAAT 23795525 Query 160936 AGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCT 160995 |||| || ||||| || | || || || |||| | | | ||||| ||| || Sbjct 23795526 AGGCAATAGGAAATTCAGCTTCTTCTTTGCTGAGGGGTTCCATAATATACTTCCGCATCC 23795585 Query 160996 TGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 |||| || || ||||| ||||| || ||||| Sbjct 23795586 TGATGAAGGAAGTGCAATCTGTTGTCATATTAATATA 23795622 >seq6295 Length=39348463 Score = 141 bits (156), Expect = 1e-28 Identities = 241/347 (69%), Gaps = 12/347 (3%) Strand=Plus/Plus Query 160620 ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTC 160679 |||||||| ||| |||||||| || |||||||| ||||| ||| | || ||| | Sbjct 31578281 ACGATCTCGGCGTTGGTCTTGAGGGGGAAGTCGGTGCCGCAGGTGTTGAGCAGGTAGCGC 31578340 Query 160680 CATTTCGCGCTCAGGTCGT----GCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCG 160735 || | |||| || || |||||||| |||||| || | || ||||||| ||| Sbjct 31578341 CA----GGGCTCGGGCCGGCGCAGCAGGTCCTCCATGCAGTTGAGGTCGGCCTGCAGGCG 31578396 Query 160736 GCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACA 160795 |||||| ||||| || |||| ||| || |||||||| |||||||| ||| || Sbjct 31578397 CGACCAGGACGCGTAGACGACGTGCTCCAGCCGGCTGGCCACGAAGACGTTGGGGAAGCA 31578456 Query 160796 CGACACGATTCCCACCACCGCCAGAAAGAA--CATCTTATCCGCCTTTCGGTCCACGTGC 160853 | | | | ||| ||| | | ||| || | |||||| |||||||||| Sbjct 31578457 GGCGGCCAGGGCACGCACGGCCTGCAGGAAGGCAGCGGG--CGCCTTGGCGTCCACGTGC 31578514 Query 160854 ACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATC 160913 ||||| ||||||||||| |||||||| | ||||| |||| | |||||||| ||| | | Sbjct 31578515 ACGCAGTACAGGTTCTGCGGCGCGTACACGGCCCGCAGCAGGCGCTCGAACAGCTCCAGC 31578574 Query 160914 TTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 | | ||||| || || ||| |||| | ||| || | | |||||| Sbjct 31578575 TGGTCGTGGATGACCATGGAGAAGGCGAGCGGGAAGGCCGCCTCCTC 31578621 Score = 104 bits (114), Expect = 3e-17 Identities = 219/326 (67%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 160046 GTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTT 160105 ||| ||||| || || ||||| || || || || | |||| || ||| || || Sbjct 31577704 GTGGCGCAGGTGCTCCTCCAGGCACTGCACCGCCTGCTCGTCCACACTCAGGTCAAACTT 31577763 Query 160106 ATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACAC 160165 || || | ||| || || | ||| || |||||| ||| ||| || ||| | | Sbjct 31577764 GTTGGCCAGCAGGTGCTGC---TGCTGGAGTATCCAGGGCAGGTCCCCCAGGCCGTAGAT 31577820 Query 160166 GCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTC 160225 ||||| || | |||| |||| |||| || ||||| | || || | | ||| Sbjct 31577821 GCAGATGGCGTGGCGGTGCGTGCCGGTGCAGGGTGGGTAGGGTGCCCCCCGCTGTATGTC 31577880 Query 160226 ACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTA 160285 ||| || ||| |||||||| || || | || | | | |||||| || ||||| Sbjct 31577881 ACCCTCCAGGTAGTGCCACTTGACTAAGCGCGCCAGGGAGTTCATGTCAGACAGCTCGTA 31577940 Query 160286 TTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAG 160345 |||| | | || | ||| || || ||||| |||| ||||| || |||||||||| Sbjct 31577941 CTTGTCGTTGGGTGGCAAGGCGCCCGGCACGCCCGGCAGGCGCTGCAGCGTGGCCCACAC 31578000 Query 160346 GTGTTCGTCGGGGCTGTACGTGTCCT 160371 ||| |||||||||||||||||||||| Sbjct 31578001 GTGCTCGTCGGGGCTGTACGTGTCCT 31578026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577168015087440