Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6834 86.0 7e-12 seq3826 86.0 7e-12 >seq6834 Length=1011959 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| ||||| || || || || ||||| || ||||| |||||||| |||||| Sbjct 384565 TCCCAGACTGAGACCGGTACCCCTTACATGCTGTATAAGGACTCTTGTAACCGGAAGAGC 384624 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| | || |||| || |||||| || || || ||||||||||| | |||||| Sbjct 384625 AACCAGCAAAACCTGGGCACCATCAAGTGCAGCAACCTGTGCACGGAAATAGTGGAGTAC 384684 Query 76016 ACAGATAAGGATGAG 76030 || || |||||| Sbjct 384685 ACCAGCAAAGATGAG 384699 >seq3826 Length=16266510 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 |||||||||||||||||||||| |||||| ||||| || ||||| ||||||||||| | Sbjct 9776946 AGAATCCATTTGACTTTATGGAGAACATTTCACTTGAAGGCAAGACAAACTTCTTTGAAA 9777005 Query 65501 AGCGAGTTGGGGACTAT 65517 || |||| || || ||| Sbjct 9777006 AGAGAGTAGGAGAATAT 9777022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596516699190720