Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4581 87.8 5e-12 >seq4581 Length=80163 Score = 87.8 bits (96), Expect = 5e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || |||||||| || || || || |||| |||||||| || |||||||| | ||| Sbjct 32191 GTCTTGACAGCTGTGTCGATGAGCCCCTCACGTCCACCCATGGCGTGGAAGAAGAACTCA 32250 Query 302680 TCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATC 302738 || ||| || || | | | ||| |||| ||||| ||||| ||| || | Sbjct 32251 GTGGG-CGTGAGACCGGCCAGGTACGAGTTCTCCACGAAGCCACGGCTCTCAGGGCCGTA 32309 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 ||| |||| | ||||| |||||||| | || || | || ||||||| ||||| || Sbjct 32310 GTCATCCTTGATGAAGTGGGGCAGGGTGCGGTGCTTGAACCCAAATGGGATGCGCTTACC 32369 Query 302799 ATCAACGTTCTGCTGTCCCA 302818 || ||||||||||| |||| Sbjct 32370 CTCCACGTTCTGCTGCCCCA 32389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471683823738678