Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7000 158 1e-32 seq2939 152 6e-31 seq2184 152 6e-31 seq432 136 5e-26 seq5669 107 2e-17 seq2440 104 3e-16 seq3826 100 3e-15 seq4581 86.0 8e-11 >seq7000 Length=13710731 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 9455189 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 9455248 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||| | ||||||| |||| | Sbjct 9455249 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGA 9455308 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| ||| |||| Sbjct 9455309 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCTGGGT 9455368 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 9455369 GCACCTGCTTCAGCACCTTGTA 9455390 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 9558103 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 9558162 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||| | ||||||| |||| | Sbjct 9558163 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGA 9558222 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| ||| |||| Sbjct 9558223 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCTGGGT 9558282 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 9558283 GCACCTGCTTCAGCACCTTGTA 9558304 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 9442662 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 9442721 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||| | ||||||| |||| | Sbjct 9442722 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGA 9442781 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | ||| |||||||| ||| |||| Sbjct 9442782 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAGATGCCGGTGTCCGGGT 9442841 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 9442842 GCACCTGCTTCAGCACCTTGTA 9442863 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 9521550 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 9521609 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||| | ||||||| |||| | Sbjct 9521610 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGA 9521669 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | ||| |||||||| ||| |||| Sbjct 9521670 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAGATGCCGGTGTCCGGGT 9521729 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 9521730 GCACCTGCTTCAGCACCTTGTA 9521751 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 9550441 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 9550500 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||| | ||||||| |||| | Sbjct 9550501 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGA 9550560 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | ||| |||||||| ||| |||| Sbjct 9550561 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAGATGCCGGTGTCCGGGT 9550620 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 9550621 GCACCTGCTTCAGCACCTTGTA 9550642 >seq2939 Length=5428 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 3480 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 3421 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||| | ||||||| |||| | Sbjct 3420 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGA 3361 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | ||| |||||||| ||| |||| Sbjct 3360 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAGATGCCGGTGTCCGGGT 3301 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 3300 GCACCTGCTTCAGCACCTTGTA 3279 >seq2184 Length=4884573 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 4729458 GCTTGGCCAACTCCCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 4729517 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 4729518 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGA 4729577 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| |||||||| |||||||| Sbjct 4729578 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 4729637 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 4729638 GCACCTGCTTCAGCACCTTGTA 4729659 >seq432 Length=33638 Score = 136 bits (150), Expect = 5e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||| | |||||| || || Sbjct 8614 GCTTGGCCAGCTCTCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGCTGGTGA 8673 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||||| | |||||||| || | |||||| || ||||||| |||| || Sbjct 8674 TGGTGGTGCGCTTGTTGTACTGCGCCAGGCGCGCCGCCTCGCTGGCGATGCGCTCGAACA 8733 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| || || |||||||||| ||| | ||| |||||| ||| ||| |||| Sbjct 8734 CATCGTTCACGAAGGAGTTCATGATGCTCATGGCCTTCGAGGAGATCCCCGTGTCCGGGT 8793 Query 1254523 GCACCTGC 1254530 |||||||| Sbjct 8794 GCACCTGC 8801 >seq5669 Length=2927181 Score = 107 bits (118), Expect = 2e-17 Identities = 136/186 (73%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431 |||| | |||||||| ||||| || ||| | | || |||||||| ||| || || Sbjct 2053494 CTGGAAGTCGGTGCCCCGCACGAAGGTGAGCTTGTCGAGGGGCACGCCAATGCTCTCCAG 2053435 Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491 |||||||||||| | |||||| ||||| || | || | ||| |||||||||| Sbjct 2053434 CATGGCCTTGATCACGGCCTCGTAGTAGCGGGTGCGCAGCTCCAGCAGCTCCCACGGCGC 2053375 Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGC 1852551 ||| |||||| |||| |||||| | |||||| |||||||| ||||| | | ||||| Sbjct 2053374 CTTCATGTTGTCCAGGTAGGCGTGGAGGTCGGCGAAGAGGATGGTGACCTGGC-GCCGGG 2053316 Query 1852552 CTGGAG 1852557 | |||| Sbjct 2053315 CGGGAG 2053310 >seq2440 Length=28713372 Score = 104 bits (114), Expect = 3e-16 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||| || || || | || Sbjct 3529317 GCTTGGCCAGCTCCCCTGGCAACAGTAGACGCACGGCTGTCTGAATTTCCCGGGAAGTGA 3529258 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || |||||||| |||||| | ||||| || | | Sbjct 3529257 TGGTTGAGCGCTTGTTGTAATGTGCCAGACGAGAGGCCTCCCCAGCAATGCGCTCAAAAA 3529198 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| |||||||| |||||||||| ||| | |||| ||||| || |||||| | Sbjct 3529197 TGTCATTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATTCCGGTGTCGGGAT 3529138 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 3529137 GAACCTGCTTCAGCACCTTGTA 3529116 >seq3826 Length=16266510 Score = 100 bits (110), Expect = 3e-15 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 |||||||||||||||||||| |||||||| ||||| |||||||||| ||| || | || Sbjct 9770697 CACCTCCTCGGCGGTCCAGAAGGAGGCCTCAGCCTTCTTGTACATCTGCCACACGTCGTG 9770638 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTCG 869944 ||| | | ||||||| ||| |||||| || || || |||||||| || ||| Sbjct 9770637 GTACTGCACGGGGAAGATGACGAAGCGGCGCGGATTCTCCCGCAACAGCGGCTCG 9770583 >seq4581 Length=80163 Score = 86.0 bits (94), Expect = 8e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 507105 AGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 507164 ||||| | ||||| |||||||| | | || || || |||||||||||| || ||| Sbjct 38415 AGCGGCTGAAGGGGAAGGAGGGCCGCGTGCGTGGGAACCTCATGGGCAAGCGTGTGGACT 38356 Query 507165 TTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGC 507224 || | || ||| ||||||||| ||||||||| | | ||||||| |||||||||| | Sbjct 38355 TTTCGGCCCGCACCGTCATCACACCCGACCCCAACCTGAGCATTGACCAGGTGGGCGTTC 38296 Query 507225 CC 507226 || Sbjct 38295 CC 38294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106557033138798