Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7000 219 7e-51 seq2939 215 8e-50 seq432 201 2e-45 seq2184 197 2e-44 seq2440 125 1e-22 seq4154 111 2e-18 seq4581 95.1 2e-13 seq5669 91.5 2e-12 seq3826 91.5 2e-12 >seq7000 Length=13710731 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 9442623 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 9442682 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| |||| ||| || ||||||||| | Sbjct 9442683 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAGT 9442742 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 9442743 GCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 9442802 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||||||| ||| |||||||||||||| |||||||||| Sbjct 9442803 TGATGCCCATGGCTTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 9442862 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 9442863 ACACATAGATGGAGTA 9442878 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 9521511 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 9521570 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| |||| ||| || ||||||||| | Sbjct 9521571 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAGT 9521630 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 9521631 GCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 9521690 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||||||| ||| |||||||||||||| |||||||||| Sbjct 9521691 TGATGCCCATGGCTTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 9521750 Query 1485710 AAAC 1485713 | || Sbjct 9521751 ACAC 9521754 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 9550402 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 9550461 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| |||| ||| || ||||||||| | Sbjct 9550462 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAGT 9550521 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 9550522 GCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 9550581 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||||||| ||| |||||||||||||| |||||||||| Sbjct 9550582 TGATGCCCATGGCTTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 9550641 Query 1485710 AAAC 1485713 | || Sbjct 9550642 ACAC 9550645 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 9455150 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 9455209 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| |||| ||| || ||||||||| | Sbjct 9455210 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAGT 9455269 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 9455270 GCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 9455329 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||| |||||||||||||| |||||||||| Sbjct 9455330 TGATGCCCATGGCCTTGGACGAGATGCCGGTGTCTGGGTGCACCTGCTTCAGCACCTTGT 9455389 Query 1485710 AAAC 1485713 | || Sbjct 9455390 ACAC 9455393 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 9558064 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 9558123 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| |||| ||| || ||||||||| | Sbjct 9558124 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAGT 9558183 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 9558184 GCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 9558243 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||| |||||||||||||| |||||||||| Sbjct 9558244 TGATGCCCATGGCCTTGGACGAGATGCCGGTGTCTGGGTGCACCTGCTTCAGCACCTTGT 9558303 Query 1485710 AAAC 1485713 | || Sbjct 9558304 ACAC 9558307 >seq2939 Length=5428 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 3519 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 3460 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| |||| ||| || ||||||||| | Sbjct 3459 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAGT 3400 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 3399 GCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 3340 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||||||| ||| |||||||||||||| |||||||||| Sbjct 3339 TGATGCCCATGGCTTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 3280 Query 1485710 AAAC 1485713 | || Sbjct 3279 ACAC 3276 >seq432 Length=33638 Score = 201 bits (222), Expect = 2e-45 Identities = 183/228 (80%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || ||| ||| Sbjct 8575 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCTCCGGGCA 8634 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| | ||||||| || ||| ||| |||||||||| || | Sbjct 8635 GCAGCAGGCGCACGGCCGTCTGCACCTCGCGGCTGGTGATGGTGGTGCGCTTGTT-GTAC 8693 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||||||||| | |||||| || ||||||| |||| || ||||| || || |||||| Sbjct 8694 TGCGCCAGGCGCGCCGCCTCGCTGGCGATGCGCTCGAACACATCGTTCACGAAGGAGTTC 8753 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | || |||||| ||| ||| |||||||||||| Sbjct 8754 ATGATGCTCATGGCCTTCGAGGAGATCCCCGTGTCCGGGTGCACCTGC 8801 >seq2184 Length=4884573 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| |||||||| || ||||||||| |||||| || ||| ||| Sbjct 4729419 TGTACTTGGTGACAGCCTTAGTACCCTCCGACACGGCGTGCTTGGCCAACTCCCCGGGCA 4729478 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 4729479 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 4729538 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 4729539 GCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 4729598 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| |||||||||||||||||| |||||||||| Sbjct 4729599 TGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 4729658 Query 1485710 AAAC 1485713 | || Sbjct 4729659 ACAC 4729662 >seq2440 Length=28713372 Score = 125 bits (138), Expect = 1e-22 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||| ||||| |||||||| || || || || || ||| ||||||| || || ||| Sbjct 3529354 TACTTAGTGACAGCCTTGGTGCCTTCAGATACAGCATGCTTGGCCAGCTCCCCTGGCAAC 3529295 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || |||||||| ||||| || || |||| ||| || ||||||||| | Sbjct 3529294 AGTAGACGCACGGCTGTCTGAATTTCCCGGGAAGTGATGGTTGAGCGCTTGTTGTAATGT 3529235 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||| || |||||| | ||||| || | ||||| |||||||| ||||||||| Sbjct 3529234 GCCAGACGAGAGGCCTCCCCAGCAATGCGCTCAAAAATGTCATTGACAAAGGAGTTCATG 3529175 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| ||||| || |||||| || |||||||| ||||||||||| Sbjct 3529174 ATGCCCATGGCCTTGGAAGAGATTCCGGTGTCGGGATGAACCTGCTTCAGCACCTTGTAC 3529115 Query 1485712 AC 1485713 || Sbjct 3529114 AC 3529113 >seq4154 Length=19707572 Score = 111 bits (122), Expect = 2e-18 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||||||||| || || |||||| ||||||| || | | ||| Sbjct 907373 TGTACTTGGTGACAGCCTTGGTACCCTCCGACACAGCGTGCTTGGCCAGCTCCCTGGGCA 907432 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||| || ||||||||| | | ||| || ||||||||| | Sbjct 907433 GCAGCAGCCTCACAGCCATCTGGATCTTCTGCGATGTGATGGTCAAGCGCTTGTTGTAGT 907492 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 || |||||||| |||||| | |||||| || | ||||| || || || ||||||| Sbjct 907493 GCACCAGGCGGGACGCCTCGCCGGCGATGCACTCAAAGATGTCATTCACGAAGGAGTTCA 907552 Query 1485650 TGAT 1485653 |||| Sbjct 907553 TGAT 907556 >seq4581 Length=80163 Score = 95.1 bits (104), Expect = 2e-13 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 429061 AGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 429120 |||| | ||||| ||||||||||| | || || || |||||||||||| || ||| Sbjct 38415 AGCGGCTGAAGGGGAAGGAGGGCCGCGTGCGTGGGAACCTCATGGGCAAGCGTGTGGACT 38356 Query 429121 TTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGTGC 429180 || |||| ||| ||||||||| ||||||||| | | ||||||| |||||||||| | Sbjct 38355 TTTCGGCCCGCACCGTCATCACACCCGACCCCAACCTGAGCATTGACCAGGTGGGCGTTC 38296 Query 429181 CC 429182 || Sbjct 38295 CC 38294 >seq5669 Length=2927181 Score = 91.5 bits (100), Expect = 2e-12 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 2411714 GCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGA 2411773 ||||| | ||| |||| ||||| || ||| || || || ||||||||| || | Sbjct 2053495 GCTGGAAGTCGGTGCCCCGCACGAAGGTGAGCTTGTCGAGGGGCACGCCAATGCTCTCCA 2053436 Query 2411774 GCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCG 2411833 ||||||||||||| | |||||| ||||| || |||| | || |||||||||| Sbjct 2053435 GCATGGCCTTGATCACGGCCTCGTAGTAGCGGGTGCGCAGCTCCAGCAGCTCCCACGGCG 2053376 Query 2411834 TCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGAT 2411876 ||| ||||| |||| |||||| | |||||| |||||||| Sbjct 2053375 CCTTCATGTTGTCCAGGTAGGCGTGGAGGTCGGCGAAGAGGAT 2053333 >seq3826 Length=16266510 Score = 91.5 bits (100), Expect = 2e-12 Identities = 91/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT--T 796360 ||||||||||||||||| ||||||||||| ||||| |||||||||| ||| | ||| | Sbjct 9770696 ACCTCCTCGGCGGTCCAGAAGGAGGCCTCAGCCTTCTTGTACATCTGCCACA--CGTCGT 9770639 Query 796361 GGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 |||| | | |||||| | || ||||| || ||||| || | |||||||||| Sbjct 9770638 GGTACTGCACGGGGAAGATGACGAAGCGGCGCGGATTCTCCCGCAACAGCGGCTCG 9770583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915491778864266