Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2395 98.7 7e-15 seq4011 89.7 4e-12 seq2337 89.7 4e-12 >seq2395 Length=5449122 Score = 98.7 bits (108), Expect = 7e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | |||||| |||| ||||||||| ||||||||||| || |||| | || Sbjct 3519276 TTTTTGTCTAAACCATAAGCAATAGCAGCAGCTGTTGGTTCATTGATGATTCGGAGTACG 3519217 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||| ||||| | || |||||||| ||||| || | || || || || || || Sbjct 3519216 TTGAGACCTGCAATAGTACCAGCATCTTTTGTGGCCTGGCGCTGGGAGTCATTGAAGTAG 3519157 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || ||||| | || |||| ||| || Sbjct 3519156 GCTGGTACAGTGACCACAGCATTTGTAAC 3519128 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||||||||| || ||||||||||| | |||||| ||||||||||| ||||| || Sbjct 3521114 GCAGACACATTAAGGATGCCATTGGCATCAATATCAAAAGTGACTTCAATCTGAGGTACG 3521055 Query 281486 CCTCTCTGAGCAGGTGGGATCCC 281508 ||||| |||| || ||||| || Sbjct 3521054 CCTCTAGGAGCTGGGGGGATGCC 3521032 >seq4011 Length=4690409 Score = 89.7 bits (98), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || || | || ||||| |||||||| |||||| | ||| | | ||||| Sbjct 151042 TGTTGTTGCTACTGTGGCTTTTGGAATGGGTATCAATAAAGCAGATATCCGGAGAGTTAT 150983 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| ||||| || ||| | || ||| || |||||||||||||| ||||| || || Sbjct 150982 TCATTATGGAGCCCCTAAGGAAATGGAATCATACTATCAAGAAATTGGAAGAGCTGGCCG 150923 Query 131296 TGATGGA 131302 ||||||| Sbjct 150922 TGATGGA 150916 >seq2337 Length=11324096 Score = 89.7 bits (98), Expect = 4e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 ||||||||| ||||| | |||||| || || |||||||||||||| |||||||| | Sbjct 4602114 CTTTGTCTTCAGACTTATCTAAACCATAAGCCAAGGCAGCAGCAGTTGGCTCATTAATCA 4602055 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 ||||| |||||| | ||||||||| ||| ||||| || || || || Sbjct 4602054 CTCTCAGAACATTCAATCCAGCAATTTGTCCGGCATCCTTGGTAGCCTG 4602006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740282114579244