Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq5050 120 5e-22 >seq5050 Length=13523281 Score = 120 bits (132), Expect = 5e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||||||| | || ||||| || |||||||| || ||||| |||||||| Sbjct 8525083 GCTTTATGGTGGTACTATGTCTCCAAAGGAATTGAATACTTGGACACAGTATTTTTCATC 8525142 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || |||| || ||||| || | || || || || || |||||||||| || ||||| Sbjct 8525143 CTGCGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTTTATCATCATTGCACCATGTTC 8525202 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || || | ||| | || || || ||| |||||||||| || Sbjct 8525203 ACCTTGTGGTGGATTGGAATCAAGTGGGTTGCAGGAGGACA 8525243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903331090011840