Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2185 147 2e-30 seq6834 82.4 7e-11 >seq2185 Length=13751209 Score = 147 bits (162), Expect = 2e-30 Identities = 154/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 8329859 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGC 8329801 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| || |||||||| ||||| |||||| || Sbjct 8329800 CAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCT 8329741 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||||||||| |||| |||| ||| ||||| ||||| | Sbjct 8329740 TCACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTCAGGG 8329681 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 8329680 TCTTCACGAAGATCTGCATG 8329661 Score = 141 bits (156), Expect = 9e-29 Identities = 153/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 8330315 GGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 8330257 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| || |||||||| ||||| |||||| || Sbjct 8330256 CAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCT 8330197 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||||||||| || | ||| | ||| ||||||||||| | Sbjct 8330196 TCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTGCCGGTCAGGG 8330137 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 8330136 TCTTCACGAAGATCTGCATG 8330117 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || |||||||| | Sbjct 8329175 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGCTTAC 8329117 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| || |||||||| ||||| |||||| || Sbjct 8329116 CAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCT 8329057 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||||||||| |||| |||| ||| ||||| ||||| | Sbjct 8329056 TCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTCAGGG 8328997 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 8328996 TCTTCACGAAGATCTGCATG 8328977 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| ||||||||||| || ||| | | | || || |||||||||| Sbjct 8329403 GGTGGACTCCTTCTGAATATTGTAATCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 8329345 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || ||||| |||||||| |||||| || Sbjct 8329344 CAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCT 8329285 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| ||||||| || |||| |||| ||| ||||| ||||| | Sbjct 8329284 TCACGTTCTCGATAGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTGCCCGTCAGGG 8329225 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 8329224 TCTTCACGAAGATCTGCATG 8329205 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || || ||||| || | Sbjct 8330087 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA-TCTTCTAGCTGTTTCC 8330029 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| || |||||||| ||||| |||||| || Sbjct 8330028 CAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCT 8329969 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| |||| |||| ||| ||||| ||||| | Sbjct 8329968 TCACGTTCTCGATAGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTCAGGG 8329909 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 8329908 TCTTCACAAAGATCTGCATG 8329889 Score = 123 bits (136), Expect = 2e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| |||||||| ||| || ||| | | | || || ||||| || | Sbjct 8329631 GGTGGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGTTTCC 8329573 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || || ||||| ||||| |||||| || Sbjct 8329572 CAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATACCTTCTTTGTCCTGGATCTTGGCCT 8329513 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| ||||||| || || | ||||| ||| ||||| ||||| | Sbjct 8329512 TCACGTTTTCGATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGG 8329453 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||||||||||||| Sbjct 8329452 TCTTCACGAAAATCTGCATG 8329433 >seq6834 Length=1011959 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| || || || | |||||| |||||||| ||||| ||||| ||| | || | Sbjct 384685 TGTACTCCACTATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTTTGCTGGT 384626 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||||| | ||| || | |||||| ||||||||||| || Sbjct 384625 TGCTCTTCCGGTTACAAGAGTCCTTATACAGCATGTAAGG 384586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483377932660560