Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq2098 154 2e-32 seq6358 141 1e-28 >seq2098 Length=7728017 Score = 154 bits (170), Expect = 2e-32 Identities = 388/581 (67%), Gaps = 19/581 (3%) Strand=Plus/Plus Query 176975 CACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAG 177034 ||| || ||||||| || | | || | ||||| || || || |||| |||| || || Sbjct 6310686 CACATGTATGAAAGAGTTTGCTGGAATATAATTCTCATAGTTTTCTCGGGATGGGCCCAG 6310745 Query 177035 TACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCT 177094 ||| | ||||| | || || | || || ||| |||||||| ||||| || || | Sbjct 6310746 TACCACTGGTACAGACCCAGCAAGAAAAGCATTGTACAGTTTTTCCGTAATGTAATCTTT 6310805 Query 177095 GTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGA--AGATAGTAGCGGGATGAAG 177152 ||| | ||||| ||||| | || || |||||||| | ||||||| | | || ||| Sbjct 6310806 GTGGATTGAGTTTTCAAAGGAAAGGTAAAATTTACAAGTGGAGATAGTTG--GAATCAAG 6310863 Query 177153 TCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTA 177212 | | ||| | ||| ||||| | | | | ||| || ||| || || |||| ||| Sbjct 6310864 TTTTTATCATTCACATAGTCTCCAAATGCTTGCCCATAGGTATGGATTTCAATGTATTTG 6310923 Query 177213 CTGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCA 177271 || ||||| || || || || || | || || |||||| || || || ||||| Sbjct 6310924 CTAAGCTCATTATAATA-CTTGACTCGAGCATGCTCAGGGTTCCAGTTACTTACAACCCA 6310982 Query 177272 GCAAACTAACTTGCTCTTTGCGGGAACGGGATTCGATACTAA-TGCAGTGTCTCTGAGCG 177330 || || | ||| |||||||| | || ||| | ||| || ||| || | | Sbjct 6310983 ACACACAAGCTT-CTCTTTGCTTG---GGACTTCAAATGTAAATGGAGTTGTACTAACCA 6311038 Query 177331 TTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGA 177390 | | | ||||| ||||| |||||||| || || |||| ||| || | || | |||| Sbjct 6311039 TCATGAAGCCATAAGGCACCTGAATATCTGAATCACGTCGGTAAGTCAGGGTCAAGTTGA 6311098 Query 177391 AAAGGTTTTCTATACC----TTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATC 177446 |||||| ||| || || || | || || ||| | | || || || ||||||||| Sbjct 6311099 AAAGGTGTTCAATGCCGCTCTTCTGTGGAG----TGTGAGTTGGAGACTCCAAGTTCATC 6311154 Query 177447 CATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTT 177506 || ||||| || || || | |||||| | || | ||||| | || |||| || Sbjct 6311155 CAGATCCATTTCTGGAATGGTGGTCTAGTTTGCTGAGGTAAATTAGTCAGATCCCAGCTG 6311214 Query 177507 ATCTCTCTGTGGTGAAAGACTACGGCATTGGCTTTGTAATA 177547 || ||||||||||||| || ||||||| || | ||| ||| Sbjct 6311215 ATGTCTCTGTGGTGAATGAGAACGGCATGGGATCTGTTATA 6311255 >seq6358 Length=37317430 Score = 141 bits (156), Expect = 1e-28 Identities = 555/866 (64%), Gaps = 9/866 (1%) Strand=Plus/Plus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 || || ||||| || || | ||| || ||| ||| |||| || | ||| ||| Sbjct 23794691 TCAAATTTGTTAGCAAAGAAGTGGTGT---TTCCACAACATCCCGTTTAAATCTCCCACC 23794747 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || ||||| ||||| || || || || | || ||| || ||||| | || || | Sbjct 23794748 CCAAACACACACACAGAACGGACATGAATTCCATGGCATGGTGGATAGGGAGCACCGTTA 23794807 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 |||||||| ||| |||| |||||||| || || || | | || | |||||| || Sbjct 23794808 AATACATCCCCTTCGAAGTACTGCCACTTCACAAATCTGGCTAGGGCATTCATGTCAGAA 23794867 Query 162301 GTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTA 162360 || ||||| | || | || || || ||||| |||| | ||| || | |||| Sbjct 23794868 ACATCATACTTATTGCTGGAAGAAACTGCACCTGGAACTTCCGGGATTCTTTGAATAGTA 23794927 Query 162361 GCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACC 162420 ||||||| || ||| || || ||||| || || || | ||| || || || | || Sbjct 23794928 GCCCACAAGTATTCATCAGGGCTATATGTATCTTTAGCCCATTCAATAAATTTAAGGATT 23794987 Query 162421 GTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCA 162480 | | | | || | || | || | ||| | |||| ||| || || || ||| Sbjct 23794988 TTGCTGTTTTCTAACACATATGCTACAAATCTCCTACTAACAACAAAATAGGCACTGCCA 23795047 Query 162481 GAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATT 162540 ||||| | |||| | | | ||| || | | ||||||| |||| |||| | | || Sbjct 23795048 GAAAAAATGGGTGTACTAAGAGGTGGTAGTTTTTTGTCTACACCCATGTTTTTCAGCTTT 23795107 Query 162541 CCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATC-TTACTGGTAGACGGGTGTTC 162599 || || || | | | || |||| | | | || || | | || | | || Sbjct 23795108 CCGTCAACAATTTCATAATGGTTTTTCCATC-GTACTTCTTTGTTTGGAGGCATTTTCTC 23795166 Query 162600 GGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGT 162659 || |||| |||||| |||| || || |||| | || || || |||||| Sbjct 23795167 AGTTTCTAAACTGTTTTCACCCTTTAAAGCTTTCAATTTCTCTACAATTTCCTCATTGGT 23795226 Query 162660 CTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCC 162719 |||| ||||||||| |||| || || || || | ||||||||| || | | Sbjct 23795227 TTTAATGGGAAAGTCCATGCCACAAAGGTTTATCAAATATTTCCATTTTGTATTCCTCCT 23795286 Query 162720 GTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGAC 162779 ||| || || | | ||||| || || || || || | ||||| || || ||||| || Sbjct 23795287 GTAGAGGTCTTTCATGCAGTTAAGGTCTGCTTGTACCCTGCTCCATGATGCATACACTAC 23795346 Query 162780 GCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGC 162839 || |||| |||| | ||||||||| || ||||| || | || ||| |||| | Sbjct 23795347 ACTTTCCATTTGGCTGGCAATAAAGACATTATCAAAACATGATGCAATTCCCTTCACTG- 23795405 Query 162840 CAG--TGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGG 162897 ||| || || || || |||| | || || || | |||||| ||||||||| Sbjct 23795406 CAGCCAGATAAGATTCGGGAGACTTT-TTGTCCACATGAATGCAGTAGTAATTCTGAGGA 23795464 Query 162898 GCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAA 162957 | ||||| | ||| || | |||||| ||||| || || || || | ||||| || ||| Sbjct 23795465 GTATAGATTGACCTTAGAAGTCTCTCAAACATATCAATTTTGTGATAAACCACTATTGAA 23795524 Query 162958 TACGCTATGGGGAACTCAGCCTCCTC 162983 || || || || || ||||| || || Sbjct 23795525 TAGGCAATAGGAAATTCAGCTTCTTC 23795550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578380707542400