Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4704 84.2 5e-11 >seq4704 Length=24298902 Score = 84.2 bits (92), Expect = 5e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917 ||| | || || |||||| || ||||| || ||||| ||||| |||| ||| || Sbjct 16882016 AGAGTGGTTGCCTTTGCTGCAGTGGAAGGAATCTTCTTCTCAGGATCTTTTGCTGCCATA 16882075 Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCG 131977 |||||||| |||||| | || |||||||||||||| | || |||||| | |||| Sbjct 16882076 TTTTGGCTGAAGAAGAGAGGCTTGATGCCTGGACTGACTTTCTCCAATGAGCTCATTAGC 16882135 Query 131978 AGAGATGAAGCATTGCATA 131996 |||||||| | | | |||| Sbjct 16882136 AGAGATGAGGTAATACATA 16882154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186704928359334