Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2185 93.3 1e-13 >seq2185 Length=13751209 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || ||||| |||||| | || Sbjct 8329677 AAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCCCAGTGACACCATTGAGAAC 8329736 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||| ||| || ||| || || || ||||| Sbjct 8329737 GTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCAGCAGAGGCTCATCTTT 8329796 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| ||||||||||| | || || |||| |||||| ||||||| ||||| Sbjct 8329797 GCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCC 8329856 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 8329857 ACCCTGCACCTGGT 8329870 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || ||||| |||||| | || Sbjct 8328993 AAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCCCAGTGACACCATTGAGAAT 8329052 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||| ||| || ||| || || || ||||| Sbjct 8329053 GTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCAGCAGAGGCTCATCTTT 8329112 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| ||||||||||| | || || | || |||||| ||||||| ||||| Sbjct 8329113 GCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAACATCCAGAAGGAGTCC 8329172 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 8329173 ACCCTGCACCTGGT 8329186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181713382091574