Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2185 100 3e-16 seq6834 86.0 6e-12 >seq2185 Length=13751209 Score = 100 bits (110), Expect = 3e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| |||| || | | | ||||| || ||||| ||||||||| || ||| || Sbjct 8329652 CAAGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCG 8329593 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| |||||||| || | | |||| || | ||| || || || || || ||||| Sbjct 8329592 GCCATCTTCCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATACCTTC 8329533 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || |||| | ||| | || || | ||||| || || | || Sbjct 8329532 TTTGTCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCAACCTCCAAGGT 8329473 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || |||||||| || || | ||||||||||||| Sbjct 8329472 GATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCATG 8329433 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| || | | | ||||| || || |||||||||||| || || || Sbjct 8330108 CAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCG 8330049 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| |||||||| || | | |||| || | ||| || || || || |||||||| Sbjct 8330048 GCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTC 8329989 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || |||| | || | ||| || | |||||||| |||| || Sbjct 8329988 TTTGTCCTGGATCTTGGCCTTCACGTTCTCGATAGTGTCACTGGGCTCCACCTCGAGAGT 8329929 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || |||||||| || || | || ||||||||| Sbjct 8329928 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 8329889 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| || | | | ||||| || || ||||||||||| || ||| || Sbjct 8329196 CAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCG 8329137 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| ||||| | | |||| || | ||| || || || || |||||||| Sbjct 8329136 TCCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTC 8329077 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || |||| | || | || || | |||||||| |||| || Sbjct 8329076 TTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGT 8329017 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || || ||||| || || | ||| ||||||||| Sbjct 8329016 GATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 8328977 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| || | | | ||||| || || |||||||||||| || ||| || Sbjct 8329880 CAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 8329821 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || || | | |||| || | ||| || || || || |||||||| Sbjct 8329820 TCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTC 8329761 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || |||| | || | || || | |||||||| |||| || Sbjct 8329760 TTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGT 8329701 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || || ||||| || || | ||| ||||||||| Sbjct 8329700 GATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 8329661 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| || | | | ||||| || || |||||||||||| || ||| || Sbjct 8330336 CAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 8330277 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || || | | |||| || | ||| || || || || |||||||| Sbjct 8330276 GCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTC 8330217 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || |||| | || | || || | |||||||| || | || Sbjct 8330216 TTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGT 8330157 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || || ||||| || || | ||| ||||||||| Sbjct 8330156 AATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 8330117 >seq6834 Length=1011959 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||| ||||| | ||||||||||||||| || ||| |||| |||||||| | Sbjct 384685 TGTACTCCACTATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTTTGCTGGT 384626 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 |||| ||||| || || | ||| || | |||||||| || |||||||| Sbjct 384625 TGCTCTTCCGGTTACAAGAGTCCTTATACAGCATGTAAGGGGTACCGGTCTC 384574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476568936501840