Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq2075 107 6e-20 seq1628 104 7e-19 seq6155 102 3e-18 seq2195 100 9e-18 seq3627 98.7 3e-17 seq2185 98.7 3e-17 seq375 98.7 3e-17 seq56 98.7 3e-17 seq6333 95.1 4e-16 seq2899 91.5 5e-15 seq5169 86.0 2e-13 seq629 78.8 3e-11 >seq2075 Length=2822917 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct 2215532 GCTGGAGTAGCTCAGTTGGGCGAGCATTAGACTGAAGATCTAAAGGTCCCTGGATCAATC 2215473 Query 2829 CCGGGCTTCAGC 2840 | |||||||||| Sbjct 2215472 CTGGGCTTCAGC 2215461 >seq1628 Length=30811505 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||| | Sbjct 15043892 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAATATCTAAAAGTCCCTGGTTCAATC 15043833 Query 2829 CCGGGCTTCAGC 2840 || || |||||| Sbjct 15043832 CCAGGTTTCAGC 15043821 >seq6155 Length=16316491 Score = 102 bits (112), Expect = 3e-18 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 4313096 TGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCT 4313037 Query 2831 GGGCTT 2836 ||| || Sbjct 4313036 GGGTTT 4313031 >seq2195 Length=14595547 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 717804 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGCCCCTGGTTCAATC 717863 Query 2829 CCGGGCTT 2836 | ||| || Sbjct 717864 CTGGGTTT 717871 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 7964914 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 7964973 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 7964974 CCGGGTTTCGGC 7964985 Score = 96.9 bits (106), Expect = 1e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||| | |||||||||||||||||| ||||||||||||||||||||||| Sbjct 9586451 GCTGAAATAGCTCAGATAGGAGAGCATTAGACTGAAAATCTAAAGGTCCCTGGTTCAACC 9586510 Query 2829 CCGGGCTT 2836 | ||| || Sbjct 9586511 CTGGGTTT 9586518 Score = 91.5 bits (100), Expect = 5e-15 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 |||| |||||||||||||||||| ||||||||||||||||||||| ||||||| | ||| Sbjct 6967705 TGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTACCTGGTTTGATCCC 6967764 Query 2831 GGGCTTCAGC 2840 ||| ||| || Sbjct 6967765 GGGTTTCGGC 6967774 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||| || ||||||||||||||||| |||||||||||||| | Sbjct 9601188 GCTGAAATAGCTCAGTTGGGATAGTGTTAGACTGAAGATCTAATGGTCCCTGGTTCAATC 9601129 Query 2829 CCGGGCTT 2836 | ||| || Sbjct 9601128 CTGGGTTT 9601121 >seq3627 Length=26862567 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||||| | Sbjct 25649208 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGATTCAATC 25649149 Query 2829 CCGGGCTTCAGC 2840 | ||| |||||| Sbjct 25649148 CTGGGTTTCAGC 25649137 >seq2185 Length=13751209 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 8325196 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 8325255 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 8325256 CCGGGTTTCGGC 8325267 >seq375 Length=373007 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 294425 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 294366 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 294365 CCGGGTTTCGGC 294354 >seq56 Length=1078 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||| | Sbjct 138 GCTGGAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGAATCAATC 197 Query 2829 CCGGGCTTCAGC 2840 ||||||||| || Sbjct 198 CCGGGCTTCGGC 209 >seq6333 Length=1074 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| |||||||||| ||||||||||||||||||||||||||||||||||||| || | Sbjct 905 GCTGGAGTAGCTCAGGTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGATCTGTC 846 Query 2829 CCGGGCTTCAGC 2840 | ||||||| || Sbjct 845 CTGGGCTTCGGC 834 >seq2899 Length=2777665 Score = 91.5 bits (100), Expect = 5e-15 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||| ||||||||||||||||||||| |||||||| |||||| ||| ||| | Sbjct 2776539 AAGTAGCTCAGCTGGGAGAGCATTAGACTGAAGTTCTAAAGGGCCCTGGCTCAGTCCCAG 2776480 Query 2833 GCTTCAGC 2840 |||||||| Sbjct 2776479 GCTTCAGC 2776472 >seq5169 Length=4286589 Score = 86.0 bits (94), Expect = 2e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||||||| ||||| | | |||| | ||||| |||| | Sbjct 3650097 GCTGAAGTAGCTCAGTTGGGAGAGCATTAAACTGACGGTGTAAAAATGCCTGGATCAATC 3650156 Query 2829 CCGGGCTTCAGC 2840 | |||||||||| Sbjct 3650157 CTGGGCTTCAGC 3650168 Score = 84.2 bits (92), Expect = 7e-13 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||||||||||||| ||||||||| |||||||||||||||| ||| || || Sbjct 3647710 AAGTAGCTCAGTTGGGAGAGCGTTAGACTGACCATCTAAAGGTCCCTGGAGCAATCCTGG 3647769 Query 2833 GCTT 2836 |||| Sbjct 3647770 GCTT 3647773 >seq629 Length=16866518 Score = 78.8 bits (86), Expect = 3e-11 Identities = 54/60 (90%), Gaps = 1/60 (2%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGA-AGATCTAAAGGTCCCTGGTTC 2824 || |||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||| Sbjct 13547487 ATAGCTGAAATAGCTCAGGTGGGAGCACATTAGACTGATAGATCTAAAGGTCCCTGGTTC 13547428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848370219630