Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7000 176 6e-38 seq2939 170 3e-36 seq432 163 4e-34 seq2184 158 2e-32 seq2440 104 3e-16 seq3826 91.5 2e-12 seq4581 89.7 7e-12 seq4154 87.8 3e-11 >seq7000 Length=13710731 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || |||| ||||| Sbjct 9455390 TACAAGGTGCTGAAGCAGGTGCACCCAGACACCGG-----CATC-TCGTCCAAGGCCATG 9455337 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||| ||| Sbjct 9455336 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCCGC 9455277 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||||||||||||| Sbjct 9455276 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACCGCCGTGCGC 9455217 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 9455216 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 9455168 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || |||| ||||| Sbjct 9558304 TACAAGGTGCTGAAGCAGGTGCACCCAGACACCGG-----CATC-TCGTCCAAGGCCATG 9558251 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||| ||| Sbjct 9558250 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCCGC 9558191 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||||||||||||| Sbjct 9558190 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACCGCCGTGCGC 9558131 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 9558130 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 9558082 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || ||| ||||| Sbjct 9442863 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAAGCCATG 9442810 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||| ||| Sbjct 9442809 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCCGC 9442750 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||||||||||||| Sbjct 9442749 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACCGCCGTGCGC 9442690 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 9442689 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 9442641 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || ||| ||||| Sbjct 9521751 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAAGCCATG 9521698 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||| ||| Sbjct 9521697 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCCGC 9521638 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||||||||||||| Sbjct 9521637 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACCGCCGTGCGC 9521578 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 9521577 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 9521529 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || ||| ||||| Sbjct 9550642 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAAGCCATG 9550589 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||| ||| Sbjct 9550588 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCCGC 9550529 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||||||||||||| Sbjct 9550528 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACCGCCGTGCGC 9550469 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 9550468 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 9550420 >seq2939 Length=5428 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || ||| ||||| Sbjct 3279 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAAGCCATG 3332 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||| ||| Sbjct 3333 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCCGC 3392 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||||||||||||| Sbjct 3393 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACCGCCGTGCGC 3452 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 3453 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 3501 >seq432 Length=33638 Score = 163 bits (180), Expect = 4e-34 Identities = 143/178 (80%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| ||||||||||| || || ||||| || |||| ||||||| || |||| Sbjct 8770 AAGGCCATGAGCATCATGAACTCCTTCGTGAACGATGTGTTCGAGCGCATCGCCAGCGAG 8711 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || | |||||||||| | ||||||||||| ||| ||| || |||||| | ||||| Sbjct 8710 GCGGCGCGCCTGGCGCAGTACAACAAGCGCACCACCATCACCAGCCGCGAGGTGCAGACG 8651 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||||||| | ||| ||| || ||||||| ||||||||||||||||||||||| Sbjct 8650 GCCGTGCGCCTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 8593 >seq2184 Length=4884573 Score = 158 bits (174), Expect = 2e-32 Identities = 172/227 (76%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 4729659 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 4729606 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | |||||| ||| Sbjct 4729605 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 4729546 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 4729545 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 4729486 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| || |||||| ||||||||| || ||||| || Sbjct 4729485 CTGCTGCTGCCCGGGGAGTTGGCCAAGCACGCCGTGTCGGAGGGTAC 4729439 >seq2440 Length=28713372 Score = 104 bits (114), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| || ||| |||| ||| || |||| ||||| Sbjct 3529116 TACAAGGTGCTGAAGCAGGTTCATCCCGACACCGGA-----ATC-TCTTCCAAGGCCATG 3529169 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| |||||||| ||||| | || ||||| | |||||| ||| Sbjct 3529170 GGCATCATGAACTCCTTTGTCAATGACATTTTTGAGCGCATTGCTGGGGAGGCCTCTCGT 3529229 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | | |||||||||| || ||| | || || || ||||| |||||||| Sbjct 3529230 CTGGCACATTACAACAAGCGCTCAACCATCACTTCCCGGGAAATTCAGACAGCCGTGCGT 3529289 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| ||| || || || || ||||||| Sbjct 3529290 CTACTGTTGCCAGGGGAGCTGGCCAAGCATGCTGTATCTGAAGGCACCA 3529338 >seq3826 Length=16266510 Score = 91.5 bits (100), Expect = 2e-12 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||||||| |||| || || ||| |||||| ||| | |||||| | | ||||| Sbjct 9770583 CGAGCCGCTGTTGCGGGAGAATCCGCGCCGCTTCGTCATCTTCCCCGTGCAGTACCACGA 9770642 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 | ||| | |||||| || ||||| ||||||||||| ||||||||||||||||| Sbjct 9770643 CGTGTGGCAGATGTAC-AAGAAGGCTGAGGCCTCCTTCTGGACCGCCGAGGAGGT 9770696 >seq4581 Length=80163 Score = 89.7 bits (98), Expect = 7e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1818122 GGGCACGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGT 1818181 ||| |||||||||| ||||||| | | ||||||||| ||||||||| ||| || | Sbjct 38294 GGGAACGCCCACCTGGTCAATGCTCAGGTTGGGGTCGGGTGTGATGACGGTGCGGGCCGA 38353 Query 1818182 AAAGTTGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCG 1818241 ||||| || |||||||||||| || || || | | ||||||||| ||||| | ||| Sbjct 38354 AAAGTCCACACGCTTGCCCATGAGGTTCCCACGCACGCGGCCCTCCTTCCCCTTCAGCCG 38413 Query 1818242 CT 1818243 || Sbjct 38414 CT 38415 >seq4154 Length=19707572 Score = 87.8 bits (96), Expect = 3e-11 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036 ||||||||||| || || || ||||| | || |||||| | |||||| |||||| Sbjct 907556 ATCATGAACTCCTTCGTGAATGACATCTTTGAGTGCATCGCCGGCGAGGCGTCCCGCCTG 907497 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 | || || |||||||||| || ||| ||| ||||||||| || ||| | ||| Sbjct 907496 GTGCACTACAACAAGCGCTTGACCATCACATCGCAGAAGATCCAGATGGCTGTGAGGCTG 907437 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | || ||||||| |||||| || || ||||| |||| Sbjct 907436 CTGCTGCCCAGGGAGCTGGCCAAGCACGCTGTGTCGGAGGGTACCA 907391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177126970661228