Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2185 122 8e-23 >seq2185 Length=13751209 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || |||||||||||||| ||||| Sbjct 8329169 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAA 8329110 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || || |||||| |||||| ||||| | | Sbjct 8329109 GATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATT 8329050 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||| | ||||| || || ||||||| || ||||| Sbjct 8329049 CTCAATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCAC 8328990 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 8328989 GAAGATCTGCAT 8328978 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| |||||||| | || ||| || | || ||||||||||| || ||||| Sbjct 8329397 CTCCTTCTGAATATTGTAATCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 8329338 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || |||||||||| |||||| ||||| | Sbjct 8329337 GATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 8329278 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || ||||||| || ||||| Sbjct 8329277 CTCGATAGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCAC 8329218 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 8329217 GAAGATCTGCAT 8329206 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 8329853 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 8329794 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || || |||||| |||||| ||||| | Sbjct 8329793 GATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTT 8329734 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||| | ||||| || || ||||||| || ||||| Sbjct 8329733 CTCAATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCAC 8329674 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 8329673 GAAGATCTGCAT 8329662 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| || | ||| |||||| || |||||||| |||| || ||| || | || Sbjct 8330330 CAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 8330271 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| || ||||| || | || ||||||||| | |||| || || ||||| Sbjct 8330270 TTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTC 8330211 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||| | | | ||||| || | |||||||||| || || || Sbjct 8330210 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGT 8330151 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||| || ||||| || |||||||| Sbjct 8330150 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8330118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450753625877520