Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4704 134 2e-26 seq3826 125 1e-23 seq6834 84.2 3e-11 >seq4704 Length=24298902 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 39631 ATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACC 39690 ||||| |||||||||| ||||| | || || || || || ||||||||||| | || Sbjct 16882153 ATGTATTACCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAAGCC 16882094 Query 39691 ACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGC 39750 | ||| || |||||||||||||||||||||||||| || |||||||| ||||| ||||| Sbjct 16882093 TCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGC 16882034 Query 39751 TGCAAATGCAACAAGTCTCTCTCC 39774 ||||| ||||| | |||||| || Sbjct 16882033 AGCAAAGGCAACCACTCTCTCCCC 16882010 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 |||||||| || ||||||||||| || ||||||||||||| | |||| |||||||||| Sbjct 16873856 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGGATATGTGAAATAAAATAT 16873797 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGT 40091 ||||| || | | |||| || ||||||| Sbjct 16873796 TTTTCTTCCGATTTCAACTTGTTCCAGT 16873769 >seq3826 Length=16266510 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | || |||||||| |||||||||||||||| || | || | Sbjct 9775673 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9775614 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | |||||| |||| |||||||| |||||||||||||| ||||| ||||||||||| | Sbjct 9775613 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 9775554 Query 39759 CAAC 39762 | || Sbjct 9775553 CTAC 9775550 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||| | || || || || | |||||| |||||||||||||| |||||||| || || Sbjct 9772547 ATCTTTTATGTAAGTGTCGATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 9772488 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || |||||||| | ||||| || || || || ||| Sbjct 9772487 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTCT 9772442 >seq6834 Length=1011959 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||||| || || || | |||| || ||||| || ||||||||||| || || | ||| Sbjct 391039 TGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATGGAT 390980 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 |||||||| |||| ||| ||||| || || ||||||||||| || Sbjct 390979 TCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGG 390936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686847888362160