Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3826 109 4e-19 seq3201 109 4e-19 seq4704 104 2e-17 seq6437 82.4 6e-11 >seq3826 Length=16266510 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || | ||||||| || ||||||||||| || || |||||||| ||||| Sbjct 9772440 CAAGAAGTGCAGATCACAGAAGCTCGCTGTTTTTATGGCTTCCAGATTGCCATGGAAAAC 9772499 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||||| |||||||||||||| || || || || ||||| |||||| Sbjct 9772500 ATTCATTCAGAAATGTACAGTCTGCTTATCGACACTTACATAAAAGAT 9772547 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || ||||| |||||||| || ||||| | |||||||| |||||||| |||||||| Sbjct 9776948 AATCCATTTGACTTTATGGAGAACATTTCACTTGAAGGCAAGACAAACTTCTTTGAAAAG 9777007 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | || |||||||||||| | ||||| |||||| Sbjct 9777008 AGAGTAGGAGAATATCAGAGGATGGGAGTCATG 9777040 >seq3201 Length=36968188 Score = 109 bits (120), Expect = 4e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 41046 TTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTG 41105 |||||||| || || || || ||| | || || || || ||| |||||||| || Sbjct 931492 TTGATGGCTTTACCCCCCTGCCATGCTCTCTGCCAATTCTATGTTGTAAATGGTGAGCTT 931551 Query 41106 TCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCG 41165 || || || ||||||| ||||| || || ||||||||||| || || || ||||| || Sbjct 931552 TCTTGCCAGCTGTATCAGAGATCTGGAGATATGGGACTAGGAGTGCCTTTCAACATTGCC 931611 Query 41166 AGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 |||||| | ||||||||||| |||||||| || || || Sbjct 931612 AGTTATTCACTGCTCACGTACATGATTGCTCATGTGAC 931649 >seq4704 Length=24298902 Score = 104 bits (114), Expect = 2e-17 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||| || | || || ||||| | |||||||| || ||||| |||||||| ||||| Sbjct 16882012 GGAGA--GAGTGGTTGCCTTTGCTGCAGTGGAAGGAATCTTCTTCTCAGGATCTTTTGCT 16882069 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||||||||||| | ||||| |||| ||||||||||| |||| || || |||||| | Sbjct 16882070 GCCATATTTTGGCTGAAGAAGAGAGGCTTGATGCCTGGACTGACTTTCTCCAATGAGCTC 16882129 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 16882130 ATTAGCAGAGATGA 16882143 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| || | |||||||| || ||||| ||||| ||||| ||| ||| || ||| Sbjct 16875110 CAGGAAGTACAGATCCCAGAAGCTCGCTGTTTCTATGGTTTTCAGATTCTCATTGAGAAT 16875169 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||| || || ||||||||||| || ||||| || |||||||||||| Sbjct 16875170 GTTCACTCAGAGATGTACAGTCTGCTAATAGACACTTACATCAAAGAT 16875217 >seq6437 Length=28009589 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 47225 TTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGA 47284 |||| |||| | || | ||||| || ||| || ||||||| || || ||||||||||| Sbjct 23185372 TTTTCAGGATTGTACAAGAAATCGGGTAAACTAGTATTTCTTGGCTTGGACAATGCAGGG 23185313 Query 47285 AAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACATTA 47344 ||||| ||||||| |||||||| ||| | | | || | | ||| ||||||| || Sbjct 23185312 AAAACCACATTACTGCACATGCTTAAAGATGACAGATTGGGACAACATGTCCCTACACTA 23185253 Query 47345 CATCC 47349 ||||| Sbjct 23185252 CATCC 23185248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397421636699470