Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_027916.2 Length=160358 Score E Sequences producing significant alignments: (Bits) Value seq4407 84.2 2e-11 >seq4407 Length=277796 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/147 (74%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 13230 CGTGCTGTC-TGCCAAGATGTCTGGATCGGGCACCTGGGGAAGTGTTACTATTTTTCAGA 13288 ||||||||| || | | || |||||| || ||||||||| ||||||||||| || || Sbjct 103318 CGTGCTGTCCTGTCCTGCTGACTGGATTGGCTACCTGGGGAGATGTTACTATTTCTCCGA 103377 Query 13289 GGCTGAAGGAAACT-GGACTCACGGGCAAAGCCAGTGTTTTGCCCTCGGTGCCTCCCTGG 13347 ||| | || | || |||||| | | || ||| || | | |||||||||||||||| Sbjct 103378 GGCCAAGGGGAGCTGGGACTC-CAGCCAGAGCAGCTGCTCCTCTCTCGGTGCCTCCCTGG 103436 Query 13348 TGGGGATTGACAGCCAGCAGGAAATGG 13374 ||||||||| || ||||||||| Sbjct 103437 CCAGGATTGACAATGAGAAGGAAATGG 103463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512972108164320