Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6834 82.4 9e-11 >seq6834 Length=1011959 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 |||||| || |||||||| | ||||||||||||| ||| | ||| |||||||| Sbjct 384699 CTCATCTTTGCTGGTGTACTCCACTATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCC 384640 Query 118799 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 118858 || ||| | || || ||| |||||| | ||||| || |||||||| || || || Sbjct 384639 CAGGTTTTGCTGGTTGCTCTTCCGGTTACAAGAGTCCTTATACAGCATGTAAGGGGTACC 384580 Query 118859 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 118893 ||||| || ||||||| | || || | ||||| Sbjct 384579 GGTCTCAGTCTGGGACTCAATGATGGCGTACCAGA 384545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618380360258640