Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq3201 104 2e-17 >seq3201 Length=36968188 Score = 104 bits (114), Expect = 2e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 111787 TGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCC 111846 || ||||||||||| ||||| || ||||| |||||||| || ||||| ||||| ||| Sbjct 931643 TGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATGTTGAAAGGCACTCCTAGTCCC 931584 Query 111847 ATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGA 111906 |||||||| ||||| ||||| ||||| || || || | | | | ||||| ||||| Sbjct 931583 ATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCACCATTTACAACATAGAATTGG 931524 Query 111907 CAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || |||| || || || || |||||| Sbjct 931523 CAGAGAGCATGGCAGGGGGGTAAAGCCATC 931494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391911713118322