Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4704 87.8 2e-12 seq2051 84.2 2e-11 >seq4704 Length=24298902 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| |||||||||||||||||||| || || || ||| || || ||||| Sbjct 16882025 GCCTTTGC-TGCAGTGGAAGGAATCTTCTTCTCAGGATCTTTTGCTGCCATATTTTGGCT 16882083 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||| | ||| | ||||| || |||| ||||||||| ||||| ||| | | || || Sbjct 16882084 GAAGAAGAGAGGCTTGATGCCTGGACTGACTTTCTCCAATGAGCTCATTAGCAGAGATGA 16882143 Query 60110 GG 60111 || Sbjct 16882144 GG 16882145 >seq2051 Length=125895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/129 (74%), Gaps = 9/129 (7%) Strand=Plus/Plus Query 159479 CGCTTCTGGGGGTCGCTCAGGACCTCATAGGCCTCCTGGACTTTCTTGAACTTCTC---- 159534 ||||||| |||||||||||| || || ||||||||| || | |||||||||||| Sbjct 87839 CGCTTCTTGGGGTCGCTCAGCACGTCGTAGGCCTCCGCGATCTCCTTGAACTTCTCCTCC 87898 Query 159535 -----GGCGTCACCGCCCTTGTCGGGGTGGTGCTCGCGGGCAAGTTTGCGGTACGCCTTT 159589 || ||| | |||||||||||||| || |||| | |||||| ||||| || Sbjct 87899 GCGTTGGGGTCCTTGTTCTTGTCGGGGTGGTACTTCAGGGCCATTTTGCGATACGCTTTC 87958 Query 159590 TTGATGTCG 159598 ||||| ||| Sbjct 87959 TTGATCTCG 87967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548476159563360