Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq499 109 6e-19 seq5461 86.0 7e-12 >seq499 Length=12417175 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | ||| || ||||| ||||| ||| |||||||| Sbjct 12030521 GTGAAGATGTATCGAGGGCTGGCAGAATCTTTCCCACCATGCAGCCTCGTACCAAACTGA 12030462 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || ||||||||||| || |||||| || |||||||||||||| | | Sbjct 12030461 CCAAGGGGCTGCAGCAGGTTGAGGTTATTACTGCCCACAAAGTTCTGAGCCAAATTAATA 12030402 Query 152149 ATCGT 152153 || || Sbjct 12030401 ATGGT 12030397 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| ||| |||| ||| || |||||| || | |||||| || || Sbjct 12030521 GTGAAGATGTATCGAGGGCTGGCAGAATCTTTCCCACCATGCAGCCTCGTACCAAACTGA 12030462 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| |||| || ||||| ||||| || |||||||||||| |||||||| || | | Sbjct 12030461 CCAAGGGGCTGCAGCAGGTTGAGGTTATTACTGCCCACAAAGTTCTGAGCCAAATTAATA 12030402 Query 117425 ATCGT 117429 || || Sbjct 12030401 ATGGT 12030397 >seq5461 Length=40299457 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||| | ||| |||||||||||||||||| ||| | ||||| || || Sbjct 33685245 GTGAAAATATAACGGGGGCTAGCAGCATCCTTGCCACCATGAAGCCTGGTACCAAACTGG 33685304 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | || || || | ||||| || |||||||| || |||||||| ||| Sbjct 33685305 CCAATGGGTTGCAGAAGATTAACATTGTTACTTCCAACAAAGTTCTGGGCCAAGTTAACA 33685364 Query 117425 ATCGT 117429 || || Sbjct 33685365 ATTGT 33685369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547167475621200