Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq5050 93.3 5e-14 seq4374 87.8 2e-12 >seq5050 Length=13523281 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 32670 GCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATA 32729 || || |||| || | | |||| ||||| || ||||| | || || | || ||||| Sbjct 8525083 GCTTTATGGTGGTACTATGTCTCCAAAGGAATTGAATACTTGGACACAGTATTTTTCATC 8525142 Query 32730 ATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTT 32789 || | ||||||||||||||| | || || | || || || || |||| |||||||| Sbjct 8525143 CTGCGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTTTATCATCATTGCACCATGTTC 8525202 Query 32790 ACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || || | ||||| || || || ||| ||||||||||||| Sbjct 8525203 ACCTTGTGGTGGATTGGAATCAAGTGGGTTGCAGGAGGACA 8525243 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 32964 CAGTTTCATTTAGCAATAGGTCATACAGCAATGTCTATATATATAGATTGTCCGTTCCCT 33023 ||||| ||| | | | || |||||||| |||||| ||||| | |||||| || || Sbjct 8529238 CAGTTCCATGTGACTCTTGGCCATACAGCCTGGTCTATTTATATTGGTTGTCCCTTTCCC 8529297 Query 33024 AGATGGATACAGTGGGCTGTTATTATATATTCTATCACCTTTATCATCCTTTTTGGCAAC 33083 | |||||| || |||| ||| ||| | ||| || ||||||| || || | ||||||||| Sbjct 8529298 AAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTTTCTTGTTTGGCAAC 8529357 Query 33084 TTTTA-TCTCAGGACATATAA 33103 || || | || |||||||||| Sbjct 8529358 TTCTACTATC-GGACATATAA 8529377 >seq4374 Length=1046499 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 50971 ATTGGCTATAACTACCTGATGGTGATATTTACTTAACGCGTTCTTGGCTCTATCTATTAG 51030 ||| || || || |||||||| ||||||| || || ||| | | |||| |||| Sbjct 851751 ATTTGCAATCACCACCTGATGCCGATATTTTTCCAAAGCCTTCCGTGATTTATCAATTAA 851810 Query 51031 TATTTCTTCATTTGTTTCTAGTTTAAAGGAAACAACAAATGCTTTTGGGGCCCATTCGTT 51090 || ||| || ||||| ||||||||||||| |||||| |||| ||||||||||| || Sbjct 851811 GATGTCTGGATCCGTTTCCAGTTTAAAGGAAATAACAAAAGCTTCAGGGGCCCATTCTTT 851870 Query 51091 AACTAAATGGGCCATCATTTTAGGAACGGCCTTCAT 51126 |||| | | || |||||| || || |||||| Sbjct 851871 GACTAGTGGAGACAGCATTTTTGGCACCATCTTCAT 851906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603127312942560