Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq6295 318 8e-82 seq4164 129 8e-25 >seq6295 Length=39348463 Score = 318 bits (352), Expect = 8e-82 Identities = 692/1014 (68%), Gaps = 35/1014 (3%) Strand=Plus/Minus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659 |||| | |||||| ||||| ||||||| ||||||| | || | | | || || Sbjct 31578704 CGCCCGCCGACTACCTGAACCTGACGGCGGACTGCGCGAGCTACCGC---GCCCGGCGGC 31578648 Query 13660 ATCTCGTG-AGGC--CCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCG 13716 ||||| ||| | |||||| ||| |||| | || || |||||| ||| || | Sbjct 31578647 GCTTCGTGCAGGTGGCGCTGAGCGAGGAGGAGGCGGCCTTCCCGCTCGCCTTCTCCATGG 31578588 Query 13717 TGATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGA 13776 | |||||| || || | ||| ||||||||||||| ||| ||||| | ||||| ||||||| Sbjct 31578587 TCATCCACGACCAGCTGGAGCTGTTCGAGCGCCTGCTGCGGGCCGTGTACGCGCCGCAGA 31578528 Query 13777 ACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGG 13836 |||| |||||||| ||||||||| ||||| | || | ||| | | || ||| | Sbjct 31578527 ACCTGTACTGCGTGCACGTGGACGCCAAGGCGCCCGCTGCCTTCCTGCAGGCCGTGCGTG 31578468 Query 13837 CCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACG 13896 || | ||| |||||||| ||||| | ||||| ||||||| | |||| || |||| Sbjct 31578467 CCCTGGCCGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGGCTGGAGCACGTCGTCTACG 31578408 Query 13897 GCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTG-GACGCCTCCCCC 13955 |||||| ||| ||||||||||||||| ||||||| ||||||| |||| ||| Sbjct 31578407 CGTCCTGGTCGCGCCTGCAGGCCGACCTCAACTGCATGGAGGACCTGCTGCGCC-GGCCC 31578349 Query 13956 GTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTG 14015 | ||| | |||||||||||| ||||| | |||||||| |||||||||||| Sbjct 31578348 GAGCCCTGGCGCTACCTGCTCAACACCTGCGGCACCGACTTCCCCCTCAAGACCAACGCC 31578289 Query 14016 GAGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAG-GGCAT 14074 |||||||||||||| ||| || || ||||| ||| | ||||| ||| ||| Sbjct 31578288 GAGATCGTGCGGGCCCTGCAGCTGCTCCGCGGCCGCAACAACATGGAGTCAGAGCGGC-- 31578231 Query 14075 GCCCAACCA-CAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGG 14133 | | ||| ||||| | ||| | | ||||| || | || ||| Sbjct 31578230 CCTCGGCCATCAAGCGCGAGCGCTGGCGCTACCAGCACGAAGTATCTGAGGGTGGCACCC 31578171 Query 14134 TGGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCT---CAGGATCCCCATCTTTGCGG 14190 |||| |||||| || |||| ||| |||||||| ||| | ||| || ||| Sbjct 31578170 TGGTGCGCACCGGGGTGACCAAGAGCCCCCCGCCGCTGGGCAGTGCCAACATGTTCACGG 31578111 Query 14191 GAAACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAG-CCG 14249 | ||||| ||| | | ||| || |||| |||||| | ||||| ||| ||| || Sbjct 31578110 GTAACGCCTACATAGTGGTGACGCGGGGCTTCGTGCGCCATGTCCT---GGA-GAGCCCC 31578055 Query 14250 GTGGCCCTGCTCATGC---ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGG 14306 | ||| | || | ||| |||| | |||||||||||||||||||||||||| ||||| Sbjct 31578054 GAGGCGCAGCGCCTGCTGGCCTGGGCCCAGGACACGTACAGCCCCGACGAGCACGTGTGG 31577995 Query 14307 GCCACCGTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTC-ACGTCAAGTACGA 14365 ||||| ||||| | || |||| ||||| | | || | ||| ||||||||| Sbjct 31577994 GCCACGCTGCAGCGCCTG-CCGGGCGTGCCGGGCGCCTTGCCACCCAACGACAAGTACGA 31577936 Query 14366 CACCTCGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATAT 14425 || |||||| || || | || ||||||||||||||| ||||| || || Sbjct 31577935 GCTGTCTGACATGAACTCCCTGGCGCGCTTAGTCAAGTGGCACTACCTGGAGGGTGACAT 31577876 Query 14426 CAAGAAAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTT 14485 || ||||| | ||||| || ||| ||||| ||| ||||||||||||||||| Sbjct 31577875 ACAGCGGGGGGCACCCTACCCACCCTGCACCGGCACGCACCGCCACGCCATCTGCATCTA 31577816 Query 14486 CGGGTCCGGCGACGTGAAGTGG---CTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGT 14541 ||| || ||| || ||| || || || | ||||||| | |||||||||| Sbjct 31577815 CGGCCTGGGGGACCTGCCCTGGATACTCCAGCAG----CAGCACCTGCTGGCCAACAAGT 31577760 Query 14542 TCGACGACGAG-ACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 | ||| ||| ||||||| || |||| || ||||| ||| || ||||| Sbjct 31577759 TTGAC-CTGAGTGTGGACGAGCAGGCGGTGCAGTGCCTGGAGGAGCACCTGCGC 31577707 >seq4164 Length=2313408 Score = 129 bits (142), Expect = 8e-25 Identities = 206/293 (70%), Gaps = 12/293 (4%) Strand=Plus/Plus Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 |||||||||||| | | |||||||| || || |||||||| |||||| | ||||||||| Sbjct 68405 TTCGAGCGCCTCTTCCGCGCCATCTATGCGCCCCAGAACCTATACTGCCTGCACGTGGAC 68464 Query 13800 TCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATC---GCCAGGTGCTTCCCT 13856 |||| | | || ||| |||| ||| ||||| | ||| |||||||| Sbjct 68465 CGCAAGGCGCCCACCGCCTTCCAGCGGGCCGT---GGCCAGCCTGGCCGCCTGCTTCCCC 68521 Query 13857 AACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT---CGCGTG 13913 || || ||||| |||| | | |||||| |||| || | | ||| || Sbjct 68522 AATGTCTTTGTGGCCTCGCGGCCGGAGCGCGTGGTCTACG---CCGGTATCTCCCGCCTG 68578 Query 13914 CAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTG 13973 || |||||||| ||||| || ||||||||| | |||| |||| ||| | |||||| Sbjct 68579 CATGCCGACCTGCGCTGCCTGCGGGACCTGGAGGGCTCCTCCGTGCCCTGGCGCTACCTG 68638 Query 13974 CTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026 |||||| |||||| |||||||||||| |||||||||||| | ||||| Sbjct 68639 CTCAACGCCTGCGGGCAGGACTTCCCGCTGCGCACCAACCTGGAGGTGGTGCG 68691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658680786301440