Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2185 129 5e-25 >seq2185 Length=13751209 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || ||||| || ||||| || Sbjct 8329661 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCCCAG 8329720 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || |||||||||||||| || ||||| || Sbjct 8329721 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCA 8329780 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| | ||| | ||||| ||||| Sbjct 8329781 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 8329840 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || |||| |||| || |||||||||| Sbjct 8329841 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGCAT 8329891 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | ||||| || || ||||| || Sbjct 8330117 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTGGAGGTGGAGCCCAG 8330176 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || |||||||||||||| || ||||| || Sbjct 8330177 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCA 8330236 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| | ||| | ||||| ||||| Sbjct 8330237 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 8330296 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||| ||| | || |||| |||| || ||||||| Sbjct 8330297 CATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGAGGGGTGG 8330344 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || ||||| || ||||| || Sbjct 8328977 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCCCAG 8329036 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || |||||||||||||| || ||||| || Sbjct 8329037 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCA 8329096 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || || || ||||||| | ||| | || || ||||| Sbjct 8329097 GCAGAGGCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 8329156 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || |||| |||| || |||||||||| Sbjct 8329157 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGCAT 8329207 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || ||||| || ||||| || Sbjct 8329889 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTGGAGCCCAG 8329948 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || || |||||||||||||| || ||||| || Sbjct 8329949 TGACACTATCGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCA 8330008 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || ||||| | ||||| | || | ||||| ||||| Sbjct 8330009 GCAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACTCTGTCCGACTACAA 8330068 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || |||| |||| || |||||||||| Sbjct 8330069 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGCAT 8330119 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || | || || || || Sbjct 8329433 CATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAG 8329492 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || || || || ||||||||||| || || || || || Sbjct 8329493 TGACACCATCGAAAACGTGAAGGCCAAGATCCAGGACAAAGAAGGTATTCCCCCTGACCA 8329552 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || ||||| ||||||| | ||| | ||||| ||||| Sbjct 8329553 GCAGAGGCTCATCTTTGCTGGGAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 8329612 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | || |||| |||| ||| | |||||||| Sbjct 8329613 TATTCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCTTGAGAGGTGGCAT 8329663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434879833610880