Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3201 152 5e-32 >seq3201 Length=36968188 Score = 152 bits (168), Expect = 5e-32 Identities = 126/154 (82%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34575 TGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGT 34634 ||||||| | ||||| ||||| | |||||||||||||| || | ||||| ||||| | Sbjct 931493 TGATGGCTTTACCCCCCTGCCATGCTCTCTGCCAATTCTATGTTGTAAATGGTGAGCTTT 931552 Query 34635 CCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTA 34694 | |||||||| ||||| |||| ||||| ||||| |||| ||||| ||||||||||| | Sbjct 931553 CTTGCCAGCTGTATCAGAGATCTGGAGATATGGGACTAGGAGTGCCTTTCAACATTGCCA 931612 Query 34695 GTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 |||| | ||||||||||||||||| |||||||| Sbjct 931613 GTTATTCACTGCTCACGTACATGATTGCTCATGT 931646 Score = 152 bits (168), Expect = 5e-32 Identities = 126/154 (82%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 |||||||| ||||||||||||||||| | ||||| ||||||||||| ||||| |||| Sbjct 931646 ACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATGTTGAAAGGCACTCCTAGT 931587 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| ||||| |||| ||||| |||||||| || ||||| ||||| | || |||||| Sbjct 931586 CCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCACCATTTACAACATAGAAT 931527 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCA 6770 |||||||| | ||||| ||||| | ||||||| Sbjct 931526 TGGCAGAGAGCATGGCAGGGGGGTAAAGCCATCA 931493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448222650331680