Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2185 102 7e-17 >seq2185 Length=13751209 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | ||||| || || ||| ||| || || || || || || Sbjct 8329892 CATGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 8329833 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || ||| | || || ||||| ||||| ||||| || || | ||||||||||| Sbjct 8329832 GGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGG 8329773 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||||||||| ||| || || | || | | || || || | ||| Sbjct 8329772 GGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTC 8329713 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || | ||||| | || |||||||| || || || ||||| ||||| Sbjct 8329712 CACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 8329662 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | ||||| || || ||| ||| || || || || || || Sbjct 8329208 CATGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 8329149 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || ||| | || || ||||| || || ||||| || || | ||||||||||| Sbjct 8329148 AGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCGGG 8329089 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||||||||| ||| || || | || | | || || || | ||| Sbjct 8329088 GGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 8329029 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 ||| || | ||||| | || |||||||| || || || ||||| ||||| ||||| Sbjct 8329028 CACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTTTAC 8328972 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | ||||| || || ||| ||| || || || || || || Sbjct 8330120 CATGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 8330061 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || | || || |||||||| || ||||| || || | ||||||||||| Sbjct 8330060 GGACAGAGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGG 8330001 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||||||||| ||| || || | || | | || || || | ||| Sbjct 8330000 GGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATAGTGTCACTGGGCTC 8329941 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || | ||||| | || || ||||| || || |||||||| ||||| Sbjct 8329940 CACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 8329890 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || | ||| | ||||| || || || ||| || || || || || |||| Sbjct 8330344 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 8330285 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| ||||| ||||| || || | ||||||||||| ||| Sbjct 8330284 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 8330225 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||||||||| ||| || || | || | | || || || | |||||| Sbjct 8330224 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 8330165 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || | || || ||||| || || || ||||| ||||| Sbjct 8330164 TCCAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8330118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429508462292822