Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2185 107 1e-18 >seq2185 Length=13751209 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || ||||||||||| || || ||| Sbjct 8329662 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCCCAGT 8329721 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||||||||| | || || || || Sbjct 8329722 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCAG 8329781 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| | |||||| | ||| |||||| Sbjct 8329782 CAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 8329841 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 8329842 ATCCAGAAGGAGTCCAC 8329858 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| ||||| || || ||||||||||| || || || Sbjct 8328975 AACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCCC 8329034 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || || ||||||||||| | || || || Sbjct 8329035 AGTGACACCATTGAGAATGTGAAGGC-CAAGATCCAGGACAAAGAAGGCATTCCCCCCGA 8329093 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||| || || || |||||||| | |||||| | || || Sbjct 8329094 CCAGCAGAGGCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTA 8329153 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 8329154 CAACATCCAGAAGGAGTCCAC 8329174 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || ||||||||||| ||||| ||| Sbjct 8329206 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTTGAGCCCAGT 8329265 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || || ||||| || || | || || || || Sbjct 8329266 GACACTATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 8329325 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| | ||||| | |||||||| Sbjct 8329326 CAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGATTACAAT 8329385 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 8329386 ATTCAGAAGGAGTCCAC 8329402 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| | || ||||| ||| Sbjct 8329434 ATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGT 8329493 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || |||||||||||| | || || || || Sbjct 8329494 GACACCATCGAAAACGTGAAGGCCAAGATCCAGGACAAAGAAGGTATTCCCCCTGACCAG 8329553 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || ||||| |||||||| | ||||| | ||| ||||| Sbjct 8329554 CAGAGGCTCATCTTTGCTGGGAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAT 8329613 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 8329614 ATTCAGAAGGAGTCCAC 8329630 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||||||||| || || ||| Sbjct 8329890 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTGGAGCCCAGT 8329949 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || || ||||||||||| | || || || || Sbjct 8329950 GACACTATCGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCAG 8330009 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || ||||| || ||||| | |||||| | ||| |||||| Sbjct 8330010 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACTCTGTCCGACTACAAC 8330069 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 8330070 ATCCAGAAGGAGTCCAC 8330086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337980376323752