Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3201 98.7 7e-16 >seq3201 Length=36968188 Score = 98.7 bits (108), Expect = 7e-16 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 ||| || || || ||||| |||||||||||||| || || || ||||| ||||| || || Sbjct 931656 TAGGCCTGTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATGTTGAAAGG 931597 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT 27326 || || || ||||| || || || ||||| || ||||| || || ||||| |||| Sbjct 931596 CACTCCTAGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCACCATTTAC 931537 Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 || || || || || | || ||||| || || | |||||| Sbjct 931536 AACATAGAATTGGCAGAGAGCATGGCAGGGGGGTAAAGCCAT 931495 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 |||| || | || || ||||| ||||| ||||||||||| || || || ||||| | | Sbjct 929019 TCATATCTTTATATTCCGCTCCAAAATGTCTCCATTGGAAACCATAAACAGGTCCTAAAT 928960 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 | || || ||||| ||| || || ||||| || || | || || ||||| | Sbjct 928959 CCCCTTCCATTCTGTGGGTGAAACCTTGTTTATCCAAGAACTCGCGTGATCCATTGGCAT 928900 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||| ||||| || ||||| || || |||||||| | ||||| || || Sbjct 928899 CCCAAATCTTGACTCCCTTTTCAGACAGCTCTTTAGCATTTGTAGAGCC 928851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369475253100314