Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3826 95.1 2e-14 seq4704 93.3 6e-14 seq6834 89.7 7e-13 >seq3826 Length=16266510 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | || |||||||| ||||| |||||||||| ||| | || || Sbjct 9775671 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 9775612 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | |||||| || | || ||||| ||||||||||| || ||||| || || || || || Sbjct 9775611 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 9775552 Query 46774 AC 46775 || Sbjct 9775551 AC 9775550 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | || || || || | ||||| ||||||||||||||||||||||| || || Sbjct 9772547 ATCTTTTATGTAAGTGTCGATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 9772488 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || |||||||| | ||||| || ||||| || ||| Sbjct 9772487 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTCT 9772442 >seq4704 Length=24298902 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | || || || || || || |||||||| | || | ||| || Sbjct 16882143 TCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAAGCCTCTCTTCTTC 16882084 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||||||||| || || |||||||| || ||||| || ||||| || || || || || Sbjct 16882083 AGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGGCA 16882024 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 16882023 ACCACTCTCTCCCC 16882010 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187 || ||||| ||||||||||| || || | ||| | ||||||||| |||||||||||| | Sbjct 16868292 ACCTCTTCTGCTGTCCAGAAGGATGCTTGTGCCTGTTTATACATTTTCCATATATCAGGG 16868233 Query 47188 TATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATAGGTTC 47240 || ||||| || || || ||||||| | ||||||||| ||| | ||| || Sbjct 16868232 TACTGGATAGGGAAGATGACAAATCGACGAGGATTTTTTCGAAGAAGAGGCTC 16868180 >seq6834 Length=1011959 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||| ||||| || | |||| || ||||| || ||||||||||| || || | ||| Sbjct 391039 TGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATGGAT 390980 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 ||||| || |||||||| ||||| || |||||||| ||||| || Sbjct 390979 TCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGG 390936 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 76327 TATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTT 76386 ||| |||||||| || || || |||||||| || || || ||||| ||||||||||| Sbjct 384675 TATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTTTGCTGGTTGCTCTTCCG 384616 Query 76387 GTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 |||||| ||||||||||| || | | || || || || ||| |||| || || || || Sbjct 384615 GTTACAAGAGTCCTTATACAGCATGTAAGGGGTACCGGTCTCAGTCTGGGACTCAATGAT 384556 Query 76447 AGATTTCCAGA 76457 | | ||||| Sbjct 384555 GGCGTACCAGA 384545 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 ||||| ||||| ||||| || || || || |||||| | ||||| ||||||||||| Sbjct 380503 AGGCCAATTCCCCCTGCAGACTTGGAAATCAGCGCACAGTGCTTCAAGGTGTCATAGATT 380444 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| ||||| || ||| ||||| || ||||||||||| Sbjct 380443 CCCTCAATACTGTCGTCCTTCATGCACAGCAGAAAACAGCT 380403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712871180542080