Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq3201 96.9 1e-15 >seq3201 Length=36968188 Score = 96.9 bits (106), Expect = 1e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 ||||| || | ||||||||| | || | |||||||||||| | | ||| ||||||| Sbjct 931495 ATGGCTTTACCCCCCTGCCATGCTCTCTGCCAATTCTATGTTGTAAATGGTGAGCTTTCT 931554 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGC 52229 ||||| |||||||| | |||| || ||| | || || || || ||||||||||| Sbjct 931555 TGCCAGCTGTATCAGAGATCTGGAGATATGGGACTAGGAGTGCCTTTCAACATTGCCAGT 931614 Query 52230 TATTCCTTGCTGACGCATCTGATTGCTC 52257 ||||| |||| ||| | ||||||||| Sbjct 931615 TATTCACTGCTCACGTACATGATTGCTC 931642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190079986075340