Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2185 161 2e-34 seq7000 93.3 9e-14 seq6231 91.5 3e-13 seq4154 89.7 1e-12 seq1956 87.8 4e-12 >seq2185 Length=13751209 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || ||||| || | ||| || || || || ||||| |||| Sbjct 8329432 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAATCAGAC 8329373 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || || |||||||| | | || |||||| ||| Sbjct 8329372 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 8329313 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||||||||| | || || Sbjct 8329312 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATAGTGTCACTGGGCTCAACC 8329253 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 8329252 TCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 8329206 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 8330116 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 8330057 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| ||||| |||||||| |||||||| | | || ||||| ||| Sbjct 8330056 AGAGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 8329997 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||| |||||||| || || ||| | ||||||||||| | || || Sbjct 8329996 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATAGTGTCACTGGGCTCCACC 8329937 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || |||| ||||| || || |||||||| Sbjct 8329936 TCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 8329890 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || ||||| || | ||| || || |||||||||||||||| Sbjct 8329204 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 8329145 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || || |||||||| | | || ||||| ||| Sbjct 8329144 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 8329085 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||| |||||||| || || || | || || ||||| | || || Sbjct 8329084 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 8329025 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||||||||| ||||| ||||||| ||||| ||||| |||||||| || Sbjct 8329024 TCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 8328975 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 8329888 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 8329829 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || || |||||||| | | || ||||| ||| Sbjct 8329828 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 8329769 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||| |||||||| || || ||| | || || ||||| | || || Sbjct 8329768 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 8329709 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 8329708 TCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 8329662 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || ||| || ||||| || | ||| || || || || |||||||| | Sbjct 8329660 CCACCTCTCAAGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCGGAC 8329601 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || |||||||| |||||||| | | || |||||| ||| Sbjct 8329600 AGGGTGCGGCCATCTTCCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 8329541 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| || ||||| |||||||| || || ||| | ||||| ||||| | || || Sbjct 8329540 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCAACC 8329481 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 8329480 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 8329434 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | |||||| || ||||| || | || || || |||||||||||||| | Sbjct 8330345 ACCACCCCTCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 8330286 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||||||||| || || || || || |||||||| | | || ||||| || Sbjct 8330285 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGG 8330226 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || ||||| |||||||| || || ||| | || || ||||| | || || Sbjct 8330225 AATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCAC 8330166 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || |||| ||||| ||||| |||||||| Sbjct 8330165 CTCCAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8330118 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 4291522 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 4291580 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 8322508 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 8322566 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 8325435 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 8325493 >seq7000 Length=13710731 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 12215816 TTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 12215758 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 12215275 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 12215333 >seq6231 Length=55547322 Score = 91.5 bits (100), Expect = 3e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 168752 ATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 4421797 ATTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 4421738 >seq4154 Length=19707572 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 906854 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 906796 >seq1956 Length=91387 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 ||||||||||||| |||||||| || || ||| | ||||| ||||| | || || | Sbjct 2355 TACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCT 2414 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 2415 CCAGCGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 2460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046644059911476