Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2185 147 2e-30 >seq2185 Length=13751209 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 8329892 CATGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 8329833 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || |||||||| | | |||||| || | Sbjct 8329832 GGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGG 8329773 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||| || ||| ||||| ||||| |||| | |||||||| || | Sbjct 8329772 GGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCAC-GTTCTCAATGGTGTCACTGGGCT 8329714 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| | || || ||||| ||||| ||||||||||||||||| |||||| Sbjct 8329713 CCACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 8329661 Score = 145 bits (160), Expect = 5e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || ||||||||| || || |||||| ||||||||||| |||| Sbjct 8330344 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 8330285 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||| | | |||||| || | || Sbjct 8330284 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 8330225 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | ||||| || ||| ||||| ||||| |||| | |||||||| || ||||| Sbjct 8330224 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCAC-GTTCTCAATGGTGTCACTGGGCTCCAC 8330166 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| ||||| ||||| || || ||||||||||||||||| |||||| Sbjct 8330165 CTCCAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 8330117 Score = 140 bits (154), Expect = 2e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 8329208 CATGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 8329149 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||| | | |||||| || | Sbjct 8329148 AGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCGGG 8329089 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| || ||| ||||| ||||| | | |||||||| || || Sbjct 8329088 GGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 8329029 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||| | || || ||||| ||||| ||||||||||||||||| |||||| Sbjct 8329028 CACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 8328977 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| | || ||||||||| || ||| |||||| || || ||||| || Sbjct 8329664 CATGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAGTC 8329605 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || |||||||| ||||| |||||||| | | |||||| || | Sbjct 8329604 GGACAGGGTGCGGCCATCTTCCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGG 8329545 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||| || ||| ||||| ||||| || | |||||||| || || Sbjct 8329544 GGGAATACCTTCTTTGTCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTC 8329485 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| || || ||||| || || |||||||||||||| || |||||| Sbjct 8329484 AACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCATG 8329433 Score = 129 bits (142), Expect = 4e-25 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||||||||| || ||| |||||| || || |||||||| Sbjct 8329436 CATGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAATC 8329377 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||| | | |||||| || | Sbjct 8329376 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGG 8329317 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| ||||| |||| | || ||||| || | Sbjct 8329316 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC-GTTCTCGATAGTGTCACTGGGCT 8329258 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | || || ||||| ||||| ||||||||||||||||| |||||| Sbjct 8329257 CAACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 8329205 Score = 129 bits (142), Expect = 4e-25 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 8330120 CATGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 8330061 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || ||||| ||||| |||||||| | | |||||| || | Sbjct 8330060 GGACAGAGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGG 8330001 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||| || ||| ||||| ||||| |||| | || ||||| || | Sbjct 8330000 GGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCAC-GTTCTCGATAGTGTCACTGGGCT 8329942 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 8329941 CCACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 8329889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359959275904998